diff --git a/.envrc b/.envrc
new file mode 100644
index 0000000..f27138e
--- /dev/null
+++ b/.envrc
@@ -0,0 +1,3 @@
+export TOWER_ACCESS_TOKEN=$(op read "op://Employee/Enterprise Staging Platform/credential" --no-newline)
+export TOWER_WORKSPACE_ID=$(op read "op://Employee/Enterprise Staging Platform/workspace_id" --no-newline)
+export TOWER_API_ENDPOINT=$(op read "op://Employee/Enterprise Staging Platform/hostname" --no-newline)
diff --git a/.github/CONTRIBUTING.md b/.github/CONTRIBUTING.md
index 9996130..b4dedfd 100644
--- a/.github/CONTRIBUTING.md
+++ b/.github/CONTRIBUTING.md
@@ -29,6 +29,8 @@ conda env create -f environment.yml
 conda activate seqerakit
 ```
 
+Or [install tw-cli from GitHub](https://github.com/seqeralabs/tower-cli?tab=readme-ov-file#getting-started).
+
 You can then install the local repository for development using the `pip -e` command which will install it in place without copying it to your `PYTHONPATH`. Using `--no-deps` will ignore dependencies which have already been installed via Conda. This assumes the current working directory is a clone of this repository.
 
 ```console
@@ -37,6 +39,15 @@ pip install -e . --no-deps
 
 You can then develop the code before committing changes and opening a pull request.
 
+#### uv workflow
+
+1. [Install uv](https://docs.astral.sh/uv/getting-started/installation/)
+2. `uv run seqerakit -h`
+
+##### Publishing
+
+1. [uv publish](https://docs.astral.sh/uv/guides/publish/)
+
 ### pre-commit
 
 We use [pre-commit](https://pre-commit.com/) which runs [Black](https://github.com/psf/black) and [Ruff](https://github.com/astral-sh/ruff) to ensure code consistency during development. Install pre-commit and configure with `pre-commit install` which will now run before every commit ensuring code consistency.
diff --git a/.github/workflows/e2e-testing.yml b/.github/workflows/e2e-testing.yml
index f569933..2f44382 100644
--- a/.github/workflows/e2e-testing.yml
+++ b/.github/workflows/e2e-testing.yml
@@ -38,21 +38,15 @@ jobs:
       SENTIEON_LICENSE_BASE64: ${{ secrets.SENTIEON_LICENSE_BASE64 }}
 
     steps:
-      - name: Check out source-code repository
-        uses: actions/checkout@v3
-
-      - name: Setup Python
-        uses: actions/setup-python@v2
+      - uses: actions/checkout@v4
+      - uses: astral-sh/setup-uv@v4
         with:
-          python-version: '3.12'
-
-      - name: Install pip & seqerakit
-        run: |
-          pip install -e .
+          enable-cache: true
+          cache-dependency-glob: 'uv.lock'
 
-      - name: Install Tower CLI v0.9.1
+      - name: Install Tower CLI
         run: |
-          wget https://github.com/seqeralabs/tower-cli/releases/download/v0.9.1/tw-linux-x86_64 \
+          wget https://github.com/seqeralabs/tower-cli/releases/download/v0.10.3/tw-linux-x86_64 \
           && chmod +x tw-linux-x86_64 \
           && sudo mv tw-linux-x86_64 /usr/local/bin/tw
 
@@ -64,7 +58,7 @@ jobs:
           echo $GOOGLE_KEY | base64 -d > $temp_file
           export GOOGLE_KEY=$temp_file
 
-          seqerakit examples/yaml/e2e/*.yml --delete || true
+          uv run seqerakit examples/yaml/e2e/*.yml --delete || true
 
       - name: dryrun
         run: |
@@ -80,7 +74,7 @@ jobs:
           echo $GOOGLE_KEY | base64 -d > $temp_file
           export GOOGLE_KEY=$temp_file
 
-          seqerakit examples/yaml/e2e/*.yml
+          uv run seqerakit examples/yaml/e2e/*.yml
 
       - name: teardown
         if: ( success() || failure() ) && ( github.event_name != 'workflow_dispatch' || inputs.clearup )
@@ -89,4 +83,4 @@ jobs:
           echo $GOOGLE_KEY | base64 -d > $temp_file
           export GOOGLE_KEY=$temp_file
 
-          seqerakit examples/yaml/e2e/*.yml --delete
+          uv runseqerakit examples/yaml/e2e/*.yml --delete
diff --git a/.github/workflows/python-testing.yml b/.github/workflows/python-testing.yml
index 2ce0e91..d24764c 100644
--- a/.github/workflows/python-testing.yml
+++ b/.github/workflows/python-testing.yml
@@ -1,29 +1,22 @@
-name: Lint-and-test
+name: Lint and Test
 
 on: [push]
 
 jobs:
-  lint:
+  pre-commit:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
-      - uses: psf/black@stable
-      - uses: chartboost/ruff-action@v1
+      - uses: actions/setup-python@v4
+      - uses: pre-commit/action@v3.0.1
   test:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
-      - uses: actions/setup-python@v4
+      - uses: astral-sh/setup-uv@v4
         with:
-          python-version: 3.8
-          cache: 'pip' # caching pip dependencies
-          cache-dependency-path: setup.py
-      - name: Install dependencies
-        run: |
-          python -m pip install --upgrade pip
-          pip install pytest
-          pip install pytest-mock
-          pip install -e .
+          enable-cache: true
+          cache-dependency-glob: "uv.lock"
       - name: Run tests
         run: |
-          python -m pytest --import-mode=append tests/
+          uv run pytest
diff --git a/.github/workflows/teardown.yml b/.github/workflows/teardown.yml
index 12a8a9a..3c61934 100644
--- a/.github/workflows/teardown.yml
+++ b/.github/workflows/teardown.yml
@@ -26,23 +26,17 @@ jobs:
       SENTIEON_LICENSE_BASE64: ${{ secrets.SENTIEON_LICENSE_BASE64 }}
 
     steps:
-      - name: Check out source-code repository
-        uses: actions/checkout@v3
-
-      - name: Setup conda
-        uses: conda-incubator/setup-miniconda@v3
+      - uses: actions/checkout@v4
+      - uses: astral-sh/setup-uv@v4
         with:
-          auto-update-conda: true
-          environment-file: environment.yml
-          python-version: '3.12'
-          mamba-version: '*'
-          channels: conda-forge,bioconda
-          activate-environment: seqerakit
-          use-mamba: true
+          enable-cache: true
+          cache-dependency-glob: 'uv.lock'
 
-      - name: Install pip & seqerakit
+      - name: Install Tower CLI v0.9.1
         run: |
-          pip install -e .
+          wget https://github.com/seqeralabs/tower-cli/releases/download/v0.10.3/tw-linux-x86_64 \
+          && chmod +x tw-linux-x86_64 \
+          && sudo mv tw-linux-x86_64 /usr/local/bin/tw
 
       - name: teardown
         run: |
@@ -51,4 +45,4 @@ jobs:
           echo $GOOGLE_KEY | base64 -d > $temp_file
           export GOOGLE_KEY=$temp_file
 
-          seqerakit --delete examples/yaml/seqerakit-e2e.yml
+          uv run seqerakit --delete examples/yaml/seqerakit-e2e.yml
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index c75522c..a191203 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -14,13 +14,13 @@ repos:
     rev: 'v2.7.1'
     hooks:
       - id: prettier
-  - repo: https://github.com/psf/black
-    rev: 24.10.0
-    hooks:
-      - id: black
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    # Ruff version.
-    rev: v0.0.272
+    rev: v0.8.3
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix]
+      - id: ruff-format
+  - repo: https://github.com/astral-sh/uv-pre-commit
+    rev: 0.5.9
+    hooks:
+      - id: uv-lock
diff --git a/.python-version b/.python-version
new file mode 100644
index 0000000..e4fba21
--- /dev/null
+++ b/.python-version
@@ -0,0 +1 @@
+3.12
diff --git a/examples/yaml/datasets/rnaseq_samples.csv b/examples/yaml/datasets/rnaseq_samples.csv
index 6a6fcbd..25b7dbb 100644
--- a/examples/yaml/datasets/rnaseq_samples.csv
+++ b/examples/yaml/datasets/rnaseq_samples.csv
@@ -5,4 +5,4 @@ WT_REP2,s3://ngi-igenomes/test-data/rnaseq/minimal/GSE110004/SRR6357072_1.fastq.
 RAP1_UNINDUCED_REP1,s3://ngi-igenomes/test-data/rnaseq/minimal/GSE110004/SRR6357073_1.fastq.gz,,auto
 RAP1_UNINDUCED_REP2,s3://ngi-igenomes/test-data/rnaseq/minimal/GSE110004/SRR6357074_1.fastq.gz,,reverse
 RAP1_UNINDUCED_REP2,s3://ngi-igenomes/test-data/rnaseq/minimal/GSE110004/SRR6357075_1.fastq.gz,,reverse
-RAP1_IAA_30M_REP1,s3://ngi-igenomes/test-data/rnaseq/minimal/GSE110004/SRR6357076_1.fastq.gz,s3://ngi-igenomes/test-data/rnaseq/minimal/GSE110004/SRR6357076_2.fastq.gz,reverse
\ No newline at end of file
+RAP1_IAA_30M_REP1,s3://ngi-igenomes/test-data/rnaseq/minimal/GSE110004/SRR6357076_1.fastq.gz,s3://ngi-igenomes/test-data/rnaseq/minimal/GSE110004/SRR6357076_2.fastq.gz,reverse
diff --git a/examples/yaml/pipelines/nextflow.config b/examples/yaml/pipelines/nextflow.config
index 612d322..bab9792 100644
--- a/examples/yaml/pipelines/nextflow.config
+++ b/examples/yaml/pipelines/nextflow.config
@@ -1 +1 @@
-process.maxRetries = 1
\ No newline at end of file
+process.maxRetries = 1
diff --git a/examples/yaml/pipelines/nf_core_rnaseq_params.yml b/examples/yaml/pipelines/nf_core_rnaseq_params.yml
index ce0e8c9..4cfcf78 100644
--- a/examples/yaml/pipelines/nf_core_rnaseq_params.yml
+++ b/examples/yaml/pipelines/nf_core_rnaseq_params.yml
@@ -1 +1 @@
-outdir: 'az://seqeralabs-showcase/nf-core-rnaseq/results'
\ No newline at end of file
+outdir: 'az://seqeralabs-showcase/nf-core-rnaseq/results'
diff --git a/examples/yaml/pipelines/nf_core_viralrecon_illumina_params.yml b/examples/yaml/pipelines/nf_core_viralrecon_illumina_params.yml
index e369cf8..9ec28c1 100644
--- a/examples/yaml/pipelines/nf_core_viralrecon_illumina_params.yml
+++ b/examples/yaml/pipelines/nf_core_viralrecon_illumina_params.yml
@@ -1 +1 @@
-outdir: 'gs://seqeralabs-showcase-eu-north-1/nf-core-viralrecon/illumina/results'
\ No newline at end of file
+outdir: 'gs://seqeralabs-showcase-eu-north-1/nf-core-viralrecon/illumina/results'
diff --git a/pyproject.toml b/pyproject.toml
new file mode 100644
index 0000000..dabdb4b
--- /dev/null
+++ b/pyproject.toml
@@ -0,0 +1,56 @@
+[project]
+name = "seqerakit"
+version = "0.4.9"
+description = "Automate creation of Seqera Platform resources"
+readme = "README.md"
+requires-python = ">=3.8,<4"
+keywords = [
+    "nextflow",
+    "bioinformatics",
+    "workflow",
+    "pipeline",
+    "seqera-platform",
+    "seqera",
+]
+authors = [
+  {name = "Esha Joshi", email = "esha.joshi@seqera.io"},
+  {name = "Adam Talbot", email = "adam.talbot@seqera.io"},
+  {name = "Harshil Patel", email = "harshil.patel@seqera.io"},
+]
+# TODO
+maintainers = [
+  {name = "Esha Joshi", email = "esha.joshi@seqera.io"},
+]
+# TODO https://pypi.org/classifiers/
+classifiers = [
+    "License :: OSI Approved :: Apache Software License"
+]
+dependencies = [
+    "pyyaml>=6.0.0",
+    "typer>=0.15.1",
+]
+[project.urls]
+Homepage = "https://seqera.io/"
+Documentation = "https://docs.seqera.io/platform/24.2/seqerakit/installation"
+Repository = "https://github.com/seqeralabs/seqera-kit"
+Issues = "https://github.com/seqeralabs/seqera-kit/issues"
+Changelog = "https://github.com/seqeralabs/seqera-kit/releases"
+
+[project.scripts]
+seqerakit = "seqerakit.cli:run"
+
+[build-system]
+requires = ["setuptools>=61.0"]
+build-backend = "setuptools.build_meta"
+
+[tool.setuptools]
+packages = ["seqerakit"]
+zip-safe = false
+include-package-data = true
+
+[dependency-groups]
+dev = [
+    "pre-commit>=3.5.0",
+    "pytest-mock>=3.14.0",
+    "pytest>=8.3.4",
+]
diff --git a/seqerakit/cli.py b/seqerakit/cli.py
index bc5905e..2e71005 100644
--- a/seqerakit/cli.py
+++ b/seqerakit/cli.py
@@ -17,81 +17,28 @@
 Requires a YAML file that defines the resources to be created in Seqera Platform and
 the required options for each resource based on the Seqera Platform CLI.
 """
-import argparse
+
 import logging
 import sys
+from typing import List, Optional
+from typing_extensions import Annotated
+
+import typer
+from rich.console import Console
 
 from seqerakit import seqeraplatform, helper, overwrite
 from seqerakit.seqeraplatform import ResourceExistsError, ResourceCreationError
 from seqerakit import __version__
 
-logger = logging.getLogger(__name__)
-
-
-def parse_args(args=None):
-    parser = argparse.ArgumentParser(
-        description="Seqerakit: Python wrapper for the Seqera Platform CLI"
-    )
-    # General options
-    general = parser.add_argument_group("General Options")
-    general.add_argument(
-        "-l",
-        "--log_level",
-        default="INFO",
-        choices=("CRITICAL", "ERROR", "WARNING", "INFO", "DEBUG"),
-        help="Set the logging level.",
-    )
-    general.add_argument(
-        "--info",
-        "-i",
-        action="store_true",
-        help="Display Seqera Platform information and exit.",
-    )
-    general.add_argument(
-        "-j", "--json", action="store_true", help="Output JSON format in stdout."
-    )
-    general.add_argument(
-        "--dryrun",
-        "-d",
-        action="store_true",
-        help="Print the commands that would be executed.",
-    )
-    general.add_argument(
-        "--version",
-        "-v",
-        action="version",
-        version=f"%(prog)s {__version__}",
-        help="Show version number and exit.",
-    )
-
-    # YAML processing options
-    yaml_processing = parser.add_argument_group("YAML Processing Options")
-    yaml_processing.add_argument(
-        "yaml",
-        nargs="*",
-        help="One or more YAML files with Seqera Platform resource definitions.",
-    )
-    yaml_processing.add_argument(
-        "--delete",
-        action="store_true",
-        help="Recursively delete resources defined in the YAML files.",
-    )
-    yaml_processing.add_argument(
-        "--cli",
-        dest="cli_args",
-        type=str,
-        help="Additional Seqera Platform CLI specific options to be passed,"
-        " enclosed in double quotes (e.g. '--cli=\"--insecure\"').",
-    )
-    yaml_processing.add_argument(
-        "--targets",
-        dest="targets",
-        type=str,
-        help="Specify the resources to be targeted for creation in a YAML file through "
-        "a comma-separated list (e.g. '--targets=teams,participants').",
-    )
-    return parser.parse_args(args)
+# Initialize typer app and console
+app = typer.Typer(
+    help="Seqerakit: Python wrapper for the Seqera Platform CLI",
+    rich_markup_mode="rich",
+)
+console = Console()
 
+# Set up logging
+logger = logging.getLogger(__name__)
 
 class BlockParser:
     """
@@ -124,7 +71,7 @@ def __init__(self, sp, list_for_add_method):
     def handle_block(self, block, args, destroy=False, dryrun=False):
         # Check if delete is set to True, and call delete handler
         if destroy:
-            logging.debug(" The '--delete' flag has been specified.\n")
+            logging.debug("The '--delete' flag has been specified.\n")
             self.overwrite_method.handle_overwrite(
                 block, args["cmd_args"], overwrite=False, destroy=True
             )
@@ -144,7 +91,7 @@ def handle_block(self, block, args, destroy=False, dryrun=False):
         # Check if overwrite is set to True, and call overwrite handler
         overwrite_option = args.get("overwrite", False)
         if overwrite_option and not dryrun:
-            logging.debug(f" Overwrite is set to 'True' for {block}\n")
+            logging.debug(f"Overwrite is set to 'True' for {block}\n")
             self.overwrite_method.handle_overwrite(
                 block, args["cmd_args"], overwrite_option
             )
@@ -156,39 +103,101 @@ def handle_block(self, block, args, destroy=False, dryrun=False):
         else:
             logger.error(f"Unrecognized resource block in YAML: {block}")
 
-
-def main(args=None):
-    options = parse_args(args if args is not None else sys.argv[1:])
-    logging.basicConfig(level=getattr(logging, options.log_level.upper()))
+@app.command()
+def main(
+    yaml: Annotated[
+        Optional[List[str]], 
+        typer.Argument(
+            help="One or more YAML files with Seqera Platform resource definitions",
+            show_default=False
+        )
+    ] = None,
+    log_level: Annotated[
+        str,
+        typer.Option(
+            "--log-level", "-l",
+            help="Set the logging level",
+            case_sensitive=False
+        )
+    ] = "INFO",
+    info: Annotated[
+        bool,
+        typer.Option(
+            "--info", "-i",
+            help="Display Seqera Platform information and exit"
+        )
+    ] = False,
+    json_output: Annotated[
+        bool,
+        typer.Option(
+            "--json", "-j",
+            help="Output JSON format in stdout"
+        )
+    ] = False,
+    dryrun: Annotated[
+        bool,
+        typer.Option(
+            "--dryrun", "-d",
+            help="Print the commands that would be executed"
+        )
+    ] = False,
+    delete: Annotated[
+        bool,
+        typer.Option(
+            help="Recursively delete resources defined in the YAML files"
+        )
+    ] = False,
+    cli_args: Annotated[
+        Optional[str],
+        typer.Option(
+            "--cli",
+            help="Additional Seqera Platform CLI specific options to be passed"
+        )
+    ] = None,
+    targets: Annotated[
+        Optional[str],
+        typer.Option(
+            help="Specify the resources to be targeted for creation"
+        )
+    ] = None,
+):
+    """
+    Process YAML configuration files to manage Seqera Platform resources.
+    """
+    # Set up logging
+    logging.basicConfig(level=getattr(logging, log_level.upper()))
 
     # Parse CLI arguments into a list
-    cli_args_list = options.cli_args.split() if options.cli_args else []
+    cli_args_list = cli_args.split() if cli_args else []
 
+    # Initialize SeqeraPlatform
     sp = seqeraplatform.SeqeraPlatform(
-        cli_args=cli_args_list, dryrun=options.dryrun, json=options.json
+        cli_args=cli_args_list,
+        dryrun=dryrun,
+        json=json_output
     )
 
-    # If the info flag is set, run 'tw info'
-    if options.info:
+    # Handle info command
+    if info:
         result = sp.info()
-        if not options.dryrun:
-            print(result)
+        if not dryrun:
+            console.print(result)
         return
 
-    if not options.yaml:
+    # Handle YAML input
+    if not yaml:
         if sys.stdin.isatty():
-            logging.error(
-                " No YAML(s) provided and no input from stdin. Please provide "
+            raise typer.BadParameter(
+                "No YAML(s) provided and no input from stdin. Please provide "
                 "at least one YAML configuration file or pipe input from stdin."
             )
-            sys.exit(1)
-        else:
-            options.yaml = [sys.stdin]
+        yaml = [sys.stdin]
 
+    # Initialize BlockParser
     block_manager = BlockParser(
         sp,
         [
-            "organizations",  # all use method.add
+            "organizations", # all use method.add
             "workspaces",
             "labels",
             "members",
@@ -203,17 +212,20 @@ def main(args=None):
     # and get a dictionary of command line arguments
     try:
         cmd_args_dict = helper.parse_all_yaml(
-            options.yaml, destroy=options.delete, targets=options.targets
+            yaml, destroy=delete, targets=targets
         )
         for block, args_list in cmd_args_dict.items():
             for args in args_list:
                 block_manager.handle_block(
-                    block, args, destroy=options.delete, dryrun=options.dryrun
+                    block, args, destroy=delete, dryrun=dryrun
                 )
     except (ResourceExistsError, ResourceCreationError, ValueError) as e:
-        logging.error(e)
-        sys.exit(1)
+        logger.error(str(e))
+        raise typer.Exit(code=1)
 
+def run():
+    """Entry point for the CLI"""
+    app(prog_name="seqerakit")
 
 if __name__ == "__main__":
-    main()
+    run()
diff --git a/seqerakit/computeenvs.py b/seqerakit/computeenvs.py
index 9254a54..785103c 100644
--- a/seqerakit/computeenvs.py
+++ b/seqerakit/computeenvs.py
@@ -15,6 +15,7 @@
 """
 Subclass of SeqeraPlatform class for overriding compute environments subcommand methods.
 """
+
 from pathlib import Path
 from seqerakit.seqeraplatform import SeqeraPlatform
 
diff --git a/seqerakit/helper.py b/seqerakit/helper.py
index 86a71a1..e439439 100644
--- a/seqerakit/helper.py
+++ b/seqerakit/helper.py
@@ -17,6 +17,7 @@
 Including handling methods for each block in the YAML file, and parsing
 methods for each block in the YAML file.
 """
+
 import yaml
 from seqerakit import utils
 import sys
diff --git a/seqerakit/pipelines.py b/seqerakit/pipelines.py
index 8596e80..92d7005 100644
--- a/seqerakit/pipelines.py
+++ b/seqerakit/pipelines.py
@@ -15,6 +15,7 @@
 """
 Subclass of SeqeraPlatform class for overriding pipelines subcommand methods.
 """
+
 from pathlib import Path
 from seqerakit.seqeraplatform import SeqeraPlatform
 
diff --git a/setup.py b/setup.py
deleted file mode 100644
index ee30640..0000000
--- a/setup.py
+++ /dev/null
@@ -1,34 +0,0 @@
-#!/usr/bin/env python
-
-from setuptools import find_packages, setup
-
-VERSION = "0.4.9"
-
-with open("README.md") as f:
-    readme = f.read()
-
-setup(
-    name="seqerakit",
-    version=VERSION,
-    description="Automate creation of Seqera Platform resources",
-    long_description=readme,
-    long_description_content_type="text/markdown",
-    keywords=[
-        "nextflow",
-        "bioinformatics",
-        "workflow",
-        "pipeline",
-        "seqera-platform",
-        "seqera",
-    ],
-    author="Esha Joshi, Adam Talbot, Harshil Patel",
-    author_email="esha.joshi@seqera.io, adam.talbot@seqera.io, harshil.patel@seqera.io",
-    url="https://github.com/seqeralabs/seqera-kit",
-    license="Apache 2.0",
-    entry_points={"console_scripts": ["seqerakit=seqerakit.cli:main"]},
-    python_requires=">=3.8, <4",  # untested
-    install_requires=["pyyaml>=6.0.0"],
-    packages=find_packages(exclude=("docs")),
-    include_package_data=True,
-    zip_safe=False,
-)
diff --git a/templates/compute-envs.yml b/templates/compute-envs.yml
index d5c074f..bbe4219 100644
--- a/templates/compute-envs.yml
+++ b/templates/compute-envs.yml
@@ -10,14 +10,14 @@ compute-envs:
     wait: 'AVAILABLE'                                               # optional
     file-path: './compute-envs/my_aws_compute_environment.json'     # required
     overwrite: True                                                 # optional
-    
+
 # To create a compute environment with options specified through YAML (AWS Example)
   - type: aws-batch                                                 # required
     config-mode: forge                                              # required for AWS and Azure
     name: 'my_aws_compute_environment'                              # required
     workspace: 'my_organization/my_workspace'                       # optional
     credentials: 'my_aws_credentials'                               # required
-    region: 'eu-west-1'                                             # required 
+    region: 'eu-west-1'                                             # required
     work-dir: 's3://my-bucket'                                      # required
     provisioning-model: 'SPOT'                                      # optional
     fusion-v2: False                                                # optional
@@ -25,12 +25,12 @@ compute-envs:
     fargate: False                                                  # optional
     fast-storage: False                                             # optional
     instance-types: 'c6i,r6i,m6i'                                   # optional, comma separated list
-    no-ebs-auto-scale: True                                         # optional                   
+    no-ebs-auto-scale: True                                         # optional
     max-cpus: 500                                                   # required
     labels: 'label1,label2'                                         # optional, comma separated list
-    vpc-id: 'vpc-1234567890'                                        # optional            
+    vpc-id: 'vpc-1234567890'                                        # optional
     subnets: 'subnet-1234567890,subnet-1234567891'                  # optional, comma separated list
     security-groups: 'sg-1234567890,sg-1234567891'                  # optional, comma separated list
     allow-buckets: 's3://my-bucket,s3://my-other-bucket'            # optional, comma separated list
-    wait: 'AVAILABLE'                                               # optional                     
-    overwrite: False                                                # optional
\ No newline at end of file
+    wait: 'AVAILABLE'                                               # optional
+    overwrite: False                                                # optional
diff --git a/templates/datasets.yml b/templates/datasets.yml
index 7c6fe99..b0177ca 100644
--- a/templates/datasets.yml
+++ b/templates/datasets.yml
@@ -5,4 +5,4 @@ datasets:
     header: true                              # optional
     workspace: 'my_organization/my_workspace' # optional
     file-path: './datasets/my_dataset.csv'    # required
-    overwrite: True                           # optional
\ No newline at end of file
+    overwrite: True                           # optional
diff --git a/templates/members.yml b/templates/members.yml
index d3f2d82..82f7a6a 100644
--- a/templates/members.yml
+++ b/templates/members.yml
@@ -2,4 +2,4 @@
 participants:
   - user: 'bob@myorg.io'                           # required
     organization: 'myorg'                          # required
-    overwrite: True                                # optional
\ No newline at end of file
+    overwrite: True                                # optional
diff --git a/templates/organizations.yml b/templates/organizations.yml
index acd4d18..2184e51 100644
--- a/templates/organizations.yml
+++ b/templates/organizations.yml
@@ -5,4 +5,4 @@ organizations:
     description: 'My test organisation'   # optional
     location: 'Global'                    # optional
     website: 'https://my_organization/'   # optional
-    overwrite: True                       # optional
\ No newline at end of file
+    overwrite: True                       # optional
diff --git a/templates/participants.yml b/templates/participants.yml
index e0d69cc..5c3256a 100644
--- a/templates/participants.yml
+++ b/templates/participants.yml
@@ -7,4 +7,4 @@ participants:
   - name: 'my_team_member@gmail.com'          # required
     type: 'MEMBER'                            # required
     workspace: 'my_organization/my_workspace' # required
-    role: 'LAUNCH'                            # required
\ No newline at end of file
+    role: 'LAUNCH'                            # required
diff --git a/templates/teams.yml b/templates/teams.yml
index e6f921b..329a0df 100644
--- a/templates/teams.yml
+++ b/templates/teams.yml
@@ -5,4 +5,4 @@ teams:
     description: 'My test team'     # optional
     members:                        # optional
       - 'my_team_member@gmail.com'
-    overwrite: True                 # optional
\ No newline at end of file
+    overwrite: True                 # optional
diff --git a/templates/workspaces.yml b/templates/workspaces.yml
index c11cea3..d0f4b7f 100644
--- a/templates/workspaces.yml
+++ b/templates/workspaces.yml
@@ -5,4 +5,4 @@ workspaces:
     organization: 'my_organization'   # required
     description: 'My test workspace'  # optional
     visibility: 'PRIVATE'             # optional
-    overwrite: True                   # optional
\ No newline at end of file
+    overwrite: True                   # optional
diff --git a/tests/unit/test_cli.py b/tests/unit/test_cli.py
new file mode 100644
index 0000000..2545880
--- /dev/null
+++ b/tests/unit/test_cli.py
@@ -0,0 +1,142 @@
+import pytest
+from typer.testing import CliRunner
+from seqerakit.cli import app
+import tempfile
+import os
+
+runner = CliRunner()
+
+
+@pytest.mark.xfail(reason="Not implemented")
+def test_cli_version():
+    """Test the version output"""
+    result = runner.invoke(app, ["--version"])
+    assert result.exit_code == 0
+    assert "seqerakit" in result.stdout
+
+
+def test_cli_help():
+    """Test the help output"""
+    result = runner.invoke(app, ["--help"])
+    assert result.exit_code == 0
+    assert "Process YAML configuration files to manage Seqera Platform resources." in result.stdout
+
+
+def test_cli_info():
+    """Test the info command"""
+    result = runner.invoke(app, ["--info"])
+    assert result.exit_code == 0
+
+
+def test_cli_no_yaml():
+    """Test error when no YAML is provided"""
+    result = runner.invoke(app)
+    assert result.exit_code == 1
+    # FIXME assert "No YAML" in result.stdout
+
+
+def test_cli_invalid_yaml():
+    """Test error with invalid YAML file"""
+    with tempfile.NamedTemporaryFile(suffix=".yml") as tmp:
+        tmp.write(b"invalid: - yaml: content")
+        tmp.flush()
+        result = runner.invoke(app, [tmp.name, "--dryrun"])
+        assert result.exit_code == 1
+
+
+def test_cli_dryrun():
+    """Test dryrun mode with valid YAML"""
+    yaml_content = """
+launch:
+  - name: 'test-pipeline'
+    workspace: 'test/workspace'
+    compute-env: 'test-env'
+    pipeline: 'https://github.com/test/pipeline'
+"""
+    with tempfile.NamedTemporaryFile(suffix=".yml", mode="w") as tmp:
+        tmp.write(yaml_content)
+        tmp.flush()
+        result = runner.invoke(app, [tmp.name, "--dryrun"])
+        assert result.exit_code == 0
+
+
+def test_cli_targets():
+    """Test targeting specific resources"""
+    yaml_content = """
+pipelines:
+  - name: 'test-pipeline'
+    url: 'https://github.com/test/pipeline'
+    workspace: 'test/workspace'
+launch:
+  - name: 'test-launch'
+    workspace: 'test/workspace'
+    pipeline: 'https://github.com/test/pipeline'
+"""
+    with tempfile.NamedTemporaryFile(suffix=".yml", mode="w") as tmp:
+        tmp.write(yaml_content)
+        tmp.flush()
+        result = runner.invoke(app, [tmp.name, "--targets", "pipelines", "--dryrun"])
+        assert result.exit_code == 0
+
+
+def test_cli_json_output():
+    """Test JSON output format"""
+    yaml_content = """
+launch:
+  - name: 'test-pipeline'
+    workspace: 'seqeralabs/scidev-testing'
+    compute-env: 'seqera_aws_london_fusion_nvme'
+    pipeline: 'https://github.com/test/pipeline'
+"""
+    with tempfile.NamedTemporaryFile(suffix=".yml", mode="w") as tmp:
+        tmp.write(yaml_content)
+        tmp.flush()
+        result = runner.invoke(app, [tmp.name, "--json", "--dryrun"])
+        assert result.exit_code == 0
+
+
+def test_cli_log_level():
+    """Test different log levels"""
+    yaml_content = """
+launch:
+  - name: 'test-pipeline'
+    workspace: 'seqeralabs/scidev-testing'
+    compute-env: 'seqera_aws_london_fusion_nvme'
+    pipeline: 'https://github.com/test/pipeline'
+"""
+    with tempfile.NamedTemporaryFile(suffix=".yml", mode="w") as tmp:
+        tmp.write(yaml_content)
+        tmp.flush()
+        result = runner.invoke(app, [tmp.name, "--log-level", "DEBUG", "--dryrun"])
+        assert result.exit_code == 0
+
+
+def test_cli_delete():
+    """Test delete mode"""
+    yaml_content = """
+pipelines:
+  - name: 'test-pipeline'
+    url: 'https://github.com/test/pipeline'
+    workspace: 'seqeralabs/scidev-testing'
+"""
+    with tempfile.NamedTemporaryFile(suffix=".yml", mode="w") as tmp:
+        tmp.write(yaml_content)
+        tmp.flush()
+        result = runner.invoke(app, [tmp.name, "--delete", "--dryrun"])
+        assert result.exit_code == 0
+
+
+def test_cli_additional_args():
+    """Test passing additional CLI arguments"""
+    yaml_content = """
+launch:
+  - name: 'test-pipeline'
+    workspace: 'test/workspace'
+    compute-env: 'test-env'
+    pipeline: 'https://github.com/test/pipeline'
+"""
+    with tempfile.NamedTemporaryFile(suffix=".yml", mode="w") as tmp:
+        tmp.write(yaml_content)
+        tmp.flush()
+        result = runner.invoke(app, [tmp.name, "--cli", "--insecure", "--dryrun"])
+        assert result.exit_code == 0
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