NAMESPACE

# Generated by roxygen2: do not edit by hand

export(calcRP_TFHit)
export(calcRP_coverage)
export(calcRP_region)
export(enhancerPromoterCor)
export(findIT_MARA)
export(findIT_TFHit)
export(findIT_TTPair)
export(findIT_enrichFisher)
export(findIT_enrichWilcox)
export(findIT_regionRP)
export(getAssocPairNumber)
export(integrate_ChIP_RNA)
export(integrate_replicates)
export(jaccard_findIT_TTpair)
export(jaccard_findIT_enrichFisher)
export(loadPeakFile)
export(mm_geneBound)
export(mm_geneScan)
export(mm_nearestGene)
export(peakGeneCor)
export(plot_annoDistance)
export(plot_peakGeneAlias_summary)
export(plot_peakGeneCor)
import(BiocGenerics)
import(BiocParallel)
import(GenomeInfoDb)
import(GenomicFeatures)
import(GenomicRanges)
import(S4Vectors)
import(rlang)
importFrom(GenomeInfoDb,seqlevels)
importFrom(IRanges,Views)
importFrom(IRanges,viewApply)
importFrom(dplyr,"%>%")
importFrom(dplyr,as_tibble)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,inner_join)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,select)
importFrom(dplyr,summarise)
importFrom(ggplot2,aes)
importFrom(glmnet,cv.glmnet)
importFrom(glmnet,glmnet)
importFrom(methods,is)
importFrom(patchwork,plot_layout)
importFrom(stats,coef)
importFrom(stats,cor.test)
importFrom(stats,dist)
importFrom(stats,fisher.test)
importFrom(stats,ks.test)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,p.adjust)
importFrom(stats,pcauchy)
importFrom(stats,qnorm)
importFrom(stats,t.test)
importFrom(stats,wilcox.test)
importFrom(utils,capture.output)