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Copy file name to clipboardExpand all lines: CHANGELOG.md
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@@ -11,13 +11,13 @@ This version is compatible with indexes created by LexicMap v0.4.0, but rebuildi
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-**Change the default value of `--partitions` from 1024 to 4096, which increases the seed-matching speed at the cost of 2 GiB more memory occupation**.
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For existing lexicmap indexes, just run `lexicmap utils reindex-seeds --partitions 4096` to re-create seed indexes.
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-**Do not save seeds of low-complexity**.
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- Fix high memory usage in writting seed data.
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- Fix high memory usage in writing seed data.
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- Change the default value of `-c/--chunks` from all available CPUs to the value of `-j/--threads`.
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- Change the default value of `--max-open-files` from 512 to 1024.
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- Add a new flag `--debug`.
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-`lexicmap search`:
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-**Improving chaining, pseudoalignment, and alignment for highly repetitive sequences**.
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-**More accurate chainning score with better chaining of overlapped anchors, this produces more accurate results with `-n/--top-n-genomes`**:
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-**More accurate chaining score with better chaining of overlapped anchors, this produces more accurate results with `-n/--top-n-genomes`**:
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- Merging two overlapped non-gapped anchors into a longer one.
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- For these with gaps, only the non-overlapped part of the second anchor is used to compute the weight.
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- Using the score of the best chain (rather than the sum) for sorting genomes when using `-n`.
Copy file name to clipboardExpand all lines: docs/content/releases/_index.md
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@@ -27,13 +27,13 @@ This version is compatible with indexes created by LexicMap v0.4.0, but rebuildi
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-**Change the default value of `--partitions` from 1024 to 4096, which increases the seed-matching speed at the cost of 2 GiB more memory occupation**.
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For existing lexicmap indexes, just run `lexicmap utils reindex-seeds --partitions 4096` to re-create seed indexes.
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-**Do not save seeds of low-complexity**.
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-
- Fix high memory usage in writting seed data.
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+
- Fix high memory usage in writing seed data.
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- Change the default value of `-c/--chunks` from all available CPUs to the value of `-j/--threads`.
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- Change the default value of `--max-open-files` from 512 to 1024.
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- Add a new flag `--debug`.
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-`lexicmap search`:
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-**Improving chaining, pseudoalignment, and alignment for highly repetitive sequences**.
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-
-**More accurate chainning score with better chaining of overlapped anchors, this produces more accurate results with `-n/--top-n-genomes`**:
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+
-**More accurate chaining score with better chaining of overlapped anchors, this produces more accurate results with `-n/--top-n-genomes`**:
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- Merging two overlapped non-gapped anchors into a longer one.
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- For these with gaps, only the non-overlapped part of the second anchor is used to compute the weight.
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- Using the score of the best chain (rather than the sum) for sorting genomes when using `-n`.
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