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app.R
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library(shiny)
library(shinydashboard)
library(shinyBS)
library(DT)
library(openmetar)
library(dplyr)
library(grDevices) #png()
# dashboardPage(
# dashboardHeader(),
# dashboardSidebar(
# sidebarMenu(
# menuItem(div(img(src="meta_analysis.png"), "Data"), tabName = "data"),
# #add image to menuItem text
# #https://stackoverflow.com/questions/24705431/how-can-i-insert-an-image-into-the-navbar-on-a-shiny-navbarpage
# menuItem("Meta-analysis", tabName = "meta", icon = icon("th")),
# menuItem("Cumulative meta-analysis", tabName = "cumulative", icon = icon("dashboard")),
# menuItem("Subgroup meta-analysis", tabName = "subgroup", icon = icon("th")),
# menuItem("Meta-regression", tabName = "meta-reg", icon = icon("dashboard")),
# menuItem("Leave-one-out meta-analysis", tabName = "leave-one-out", icon = icon("dashboard"))
# )
# ),#ends dashboardSidebar
# dashboardBody(
# tabItems(
# tabItem(tabName="data"),
# tabItem(tabName="meta"),
# tabItem(tabName="cumulative"),
# tabItem(tabName="subgroup"),
# tabItem(tabName="meta-reg"),
# tabItem(tabName="leave-one-out")
# )
# )#ends dashboardBody
# )
ui<-function(request){
bootstrapPage('',
navbarPage(#div(id="title", img(src="meta.png")), #logo
#"OpenMetaAnalyst", #just the words
title=HTML("<a style=font-size:150%;color:black;
href=\"http://www.cebm.brown.edu/openmeta\">OpenMeta[Analyst]</a>"),
navbarMenu(div(id="data_div", img(src="data-512.png")),
tabPanel("Upload csv",
source("openmeta/ui/ui_data_csv.R", local = TRUE))
),#navbarMenu "Data"
bsTooltip("data_div", "Data", "right", options = list(container = "body")),
navbarMenu(div(id="meta_analysis_div", img(src="meta_analysis.png")),
tabPanel("Normal approximation",
source("openmeta/ui/ui_meta_norm.R", local = TRUE)),
tabPanel("Exact likelihood",
source("openmeta/ui/ui_meta_exact.R", local = TRUE))
),#tabPanel "Meta-analysis"
#https://stackoverflow.com/questions/44953873/add-tooltip-to-tabs-in-shiny
#add tooltip to the Meta-analysis tabPanel
bsTooltip("meta_analysis_div", "Meta-analysis", "right", options = list(container = "body")),
navbarMenu(div(id="cum_meta_analysis_div", img(src="cum_meta_analysis.png")),
tabPanel("Accumulative data",
source("openmeta/ui/ui_cum_data.R", local = TRUE)),
tabPanel("Normal approximation",
source("openmeta/ui/ui_cum_norm.R", local = TRUE)),
tabPanel("Exact likelihood",
source("openmeta/ui/ui_cum_exact.R", local = TRUE))
),#tabPanel "Cumulative meta-analysis"
bsTooltip("cum_meta_analysis_div",
"Cumulative meta-analysis", "right", options = list(container = "body")),
tabPanel(div(id="subgroup_meta_analysis_div", img(src="subgroup_ma.png"))
),#tabPanel "Subgroup meta-analysis"
bsTooltip("subgroup_meta_analysis_div",
"Subgroup meta-analysis", "right", options = list(container = "body")),
tabPanel(div(id="meta_regression_div", img(src="meta_reg.png"))
),#tabPanel "Meta-regression"
bsTooltip("meta_regression_div", "Meta regression", "right", options = list(container = "body")),
tabPanel(div(id="leave_one_out_div", img(src="leave_one_out.png"))
),#tabPanel "Leave-one-out meta-analysis"
bsTooltip("leave_one_out_div",
"Leave-one-out meta-analysis", "right", options = list(container = "body")),
tabPanel(div(id="report_div", img(src="report.png")),
source("openmeta/ui/ui_report.R", local = TRUE)
),#tabPanel "Report"
bsTooltip("report_div",
"Generate report", "right", options = list(container = "body"))
),#end navbarPage
tags$style(type='text/css', '.navbar {
font-family: Times;
font-size: 30px;}')
)
}
server <- function(input, output, session) {
source("openmeta/support/helpers.R", local = TRUE)
source("openmeta/server/server_data_csv.R", local = TRUE)
source("openmeta/server/server_meta_norm.R", local = TRUE)
source("openmeta/server/server_meta_exact.R", local = TRUE)
source("openmeta/server/server_cum_data.R", local = TRUE)
source("openmeta/server/server_cum_norm.R", local = TRUE)
source("openmeta/server/server_report.R", local = TRUE)
}
shinyApp(ui, server)