Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

[0.4.0] - 2019-10-11

Changed

Split up the Shiny-like app from rnaseqc.over_time into its own modules
Fixed pooling_qc_sample gsi-qc-etl imports to conform to v0.5.0

Added

BamQC app that mirrors the Shiny-like look of rnaseqc.over_time
ShinyMimic class that encapsulates app logic independent of input DataFrame

[0.3.0] - 2019-10-03

Changed

Updated all modules to work with gsi-qc-etl 0.5.0 (which uses versioned DataFrames)
Columns defined within a module are proper constants

Removed

aq module from runreport (dead code)
histograms module from runscanner (did not work as a visualization)

Added

Cache location needs to be specified by environmental variable

[0.2.0] - 2019-09-05

RNASeQC

Added

User can select shape and colour of plotted data
Exportable Data Table that matches currently visible plotted data
Plots can match Data Table sorting

Changes

Updated to Dash 1.2.0
Proper naming and capitalization of variables
Improved function documentation
Data is pulled from Pinery Samples Provenance instead of Pinery Samples

[0.1.0] - 2019-08-02

Belated start of a Changelog

Added

setup.py file for easy installation
index.py as the Dashi home screen
Support for Dash 1.0
bamqc.gbovertime module for visualizing GB production over time
bcl2fastq.index_summary module for pooling visualization
poolqc.pooling_qc_sample module for RNA-Seq QC data after Pooling Run
rnaseqc.over_time module for visualizing RNASeQC metrics
runreport.proj_hist module to show project coverage of a run compared to previous runs
runscanner.yield_over_time module to show machine yield over time