diff --git a/ChangeLog b/ChangeLog deleted file mode 100644 index ba1da1819..000000000 --- a/ChangeLog +++ /dev/null @@ -1,163 +0,0 @@ -2014-07-12 Qiang Kou - - mzid file reading - -2014-05-19 Qiang Kou - - Backend pwiz implemented - -2012-08-20 Steffen Neumann - - * src/boost/thread/xtime.hpp: applied another patch by Alvaro Cuadros Inostroza - for gcc-4.7.1 compatibility in boost, see e.g. https://bbs.archlinux.org/viewtopic.php?pid=1126282 - and https://svn.boost.org/trac/boost/ticket/6940 - -2012-05-15 Steffen Neumann - - * libstdcpp3.hpp: applied patch by Alvaro Cuadros Inostroza - for gcc-4.7 compatibility in boost - -2012-04-04 Steffen Neumann - - * src/pwiz/data/msdata/RAMPAdapter.cpp (pwiz): Revert hack from 2012-03-26 - * src/pwiz/data/msdata/MSData.hpp (pwiz): Add Patch suggested by Brian Pratt, - for a better fix of problem if first spectrum if it has an index==0 - -2012-04-04 Steffen Neumann - - * src/ramp.h: enable new I/O on windows - - 2012-03-31 Steffen Neumann - - * src/ramp.h: disable new I/O on windows, should compile, - but will fail unit test with *.gz file - -2012-03-26 Steffen Neumann - - * Added unit tests for *.mzdata.gz - -2012-03-26 Steffen Neumann - - * RAMPAdapter.cpp: fix reading the first spectrum - if it has an index==0 - -2012-03-13 Steffen Neumann - - * R/ramp.R, src/rampR.cpp: back-ported the old XCMS rampR - interface, which is much faster than cramp - -2012-02-28 Steffen Neumann - - * src/RcppRamp.cpp: Change the (temporary) Vectors from STL - to Rcpp::*Vector for reduced memory footprint - -2011-12-14 Steffen Neumann - - * Updated to pwiz r3148 - -2011-11-24 Steffen Neumann - * Fixed linking of NetCDF with previous help from - Dan Tenenbaum and Martin Morgan. - -2011-09-16 Laurent Gatto - * Changed é to \'e in mzR.bib. - -2011-09-07 Laurent Gatto - * temporary fixed the 'could not find function "getClass"' warning - adding require("methods", ... ) to .onLoad - (see http://comments.gmane.org/gmane.comp.lang.r.rcpp/2140) - but this produces a note about 'Package startup functions should - not change the search path.' But adding methods to the depends - fiels, as advertised in .onAttach, does not fix the original - warning. - * Bump version number to 0.99.2 to track changes. - -2011-08-10 Steffen Neumann - * Temporary Fix for "unable to find ... for function "peaks" - by explicitely specifying mzR:: namespace - * Bump version for resubmission to BioC - -2011-08-09 Steffen Neumann - * Minor fixes in documentation - * Bump version for resubmission to BioC - -2011-08-01 Steffen Neumann - * Added header(), peaks(), length() - and show() for netCDF. This passes all unit tests - for a modified version of xcms, closing Issue #15 - -2011-07-22 Steffen Neumann - * Non-functional support for CDF - -2011-07-11 Laurent Gatto - * simplified show method - * rewrote runInfo in R - * Misc changes in doc and vignette - * bumped version to 0.5.5 - -2011-07-08 Steffen Neumann - * fixed Windows, checked for x64 - * bumped version to 0.5.4 - -2011-07-05 Laurent Gatto - * small doc and vignette updates - * peaks("mzRramp","missing") always returns a list - (possibly of length 1) of matrices. - * bumped version to 0.5.2 - -2011-06-16 Laurent Gatto - * updated header("mzRamp","numeric") when - length(numeric) > 1 to return 'flat' data.frame - * bumped verison to 0.5.1 - -2011-06-10 Laurent Gatto - * bumped version to 0.5.0 - * implementing backend design and related changes - -2011-06-09 Laurent Gatto - * bumped version to 0.4.4 - * created format specific classes and methods - * added (optional) format argument to openMSfile - * updated documentation - -2011-06-01 Laurent Gatto - * added fileName slot to mzR class (now version 0.1.3) - * updated openMSfile, fileName and mzR validity to - reflect new mzR@fileName slot. - * update get3Dmap and initializeRamp generics - added - explicit non-dispatching elements. - * added mzR.bib bibtex and Makefile files - * updated docs and vignette - -2011-06-01 Steffen Neumann - * fix call to fileName() in instrumentInfo() - * added Makefile for a simple "make" in unitTests - * added man pages - -2011-05-31 Laurent Gatto - * file extension is checked to avoid retrieving - instrument info for mzdata files (see - https://github.com/sneumann/mzR/issues/5) - * update Rcpp version dependency - * updated unit test - -2011-05-27 Laurent Gatto - * bumped verssion to 0.4.3 - * added further refinements and dummy documenation - * builds, checks and installs fine - -2011-05-25 Laurent Gatto - * bumped verion to 0.4.1 - * cleaned up code and file names, to fit with - Bioconductor's naming schemes. - * created S4 classes and methods - -2011-05-01 Laurent Gatto - * added cleanup script to version 0.4 - -2010-12-16 Steffen Neumann - - * push 0.3 which adds mzML support, and has (a few) - unit tests. R CMD check finishes mostly clean, with - some problems with Rcpp/methods -