Update cluster values

Author: martin-steinegger

regression/run_cluster_update.sh

@@ -17,7 +17,7 @@ CLUSTERMEMEBER=$(wc -l "$RESULTS/clu_updated.tsv" | awk '{print $1}')
 CLUSTER=$(echo $(cut -f1 "$RESULTS/clu_updated.tsv" | sort -u | wc -l))
 UPDATEDSEQCNT=$(wc -l "$RESULTS/seqdb_update.index" | awk '{print $1}')
 
-TARGET="32132 24732 32132"
+TARGET="32132 24753 32132"
 ACTUAL="$CLUSTERMEMEBER $CLUSTER $UPDATEDSEQCNT"
 awk -v actual="$ACTUAL" -v target="$TARGET" 'BEGIN { print (actual == target) ? "GOOD" : "BAD"; \
     print "Expected: ", target; \

regression/run_easy_cluster_reassign.sh

@@ -4,7 +4,7 @@ cat  "${DATADIR}/clu.fasta" | "${MMSEQS}" easy-cluster stdin "$RESULTS/results"
 
 awk 'BEGIN { l = "" } l != $1 { l = $1; cnt++; } { t++; } END { print cnt"\t"t"\t"(t/cnt) }' "$RESULTS/results_cluster.tsv" > "$RESULTS/results_summary.tsv"
 ACTUAL="$(cut -f1 "$RESULTS/results_summary.tsv")"
-TARGET="17403"
+TARGET="17257"
 awk -v actual="$ACTUAL" -v target="$TARGET" \
     'BEGIN { print (actual == target) ? "GOOD" : "BAD"; print "Expected: ", target; print "Actual: ", actual; }' \
     > "${RESULTS}.report"

regression/run_easy_nuclcluster.sh

@@ -5,7 +5,7 @@ TARGET="${DATADIR}/genes.fasta"
 
 awk 'BEGIN { l = "" } l != $1 { l = $1; cnt++; } { t++; } END { print cnt"\t"t"\t"(t/cnt) }' "$RESULTS/results_cluster.tsv" > "$RESULTS/results_summary.tsv"
 ACTUAL="$(cut -f1 "$RESULTS/results_summary.tsv")"
-TARGET="106"
+TARGET="108"
 awk -v actual="$ACTUAL" -v target="$TARGET" \
     'BEGIN { print (actual == target) ? "GOOD" : "BAD"; print "Expected: ", target; print "Actual: ", actual; }' \
     > "${RESULTS}.report"