Add better error message

martin-steinegger · martin-steinegger · commit 0266ea53bbdb · 2025-01-10T22:06:41.000+09:00
diff --git a/src/prefiltering/ungappedprefilter.cpp b/src/prefiltering/ungappedprefilter.cpp
@@ -405,7 +405,7 @@ int prefilterInternal(int argc, const char **argv, const Command &command, int m
         const bool isGpuDb = DBReader<unsigned int>::getExtendedDbtype(tdbr->getDbtype()) & Parameters::DBTYPE_EXTENDED_GPU;
         if (isGpuDb == false) {
             Debug(Debug::ERROR) << "Database " << FileUtil::baseName(par.db2) << " is not a valid GPU database\n" 
-              << "Please call: makepaddedseqdb " << FileUtil::baseName(par.db2) << " " << FileUtil::baseName(par.db2) "_pad\n";
+                                << "Please call: makepaddedseqdb " << FileUtil::baseName(par.db2) << " " << FileUtil::baseName(par.db2) << "_pad\n";
             EXIT(EXIT_FAILURE);
         }
     }
diff --git a/src/util/gpuserver.cpp b/src/util/gpuserver.cpp
@@ -32,7 +32,7 @@ int gpuserver(int argc, const char **argv, const Command& command) {
     const bool isGpuDb = DBReader<unsigned int>::getExtendedDbtype(dbr->getDbtype()) & Parameters::DBTYPE_EXTENDED_GPU;
     if (isGpuDb == false) {
         Debug(Debug::ERROR) << "Database " << FileUtil::baseName(par.db1) << " is not a valid GPU database\n"
-                            << "Please call: makepaddedseqdb " << FileUtil::baseName(par.db2) << " " << FileUtil::baseName(par.db2) "_pad\n";
+                            << "Please call: makepaddedseqdb " << FileUtil::baseName(par.db2) << " " << FileUtil::baseName(par.db2) << "_pad\n";
         EXIT(EXIT_FAILURE);
     }
 

Original file line number	Diff line number	Diff line change
`@@ -405,7 +405,7 @@ int prefilterInternal(int argc, const char **argv, const Command &command, int m`
`405`	`405`	`const bool isGpuDb = DBReader<unsigned int>::getExtendedDbtype(tdbr->getDbtype()) & Parameters::DBTYPE_EXTENDED_GPU;`
`406`	`406`	`if (isGpuDb == false) {`
`407`	`407`	`Debug(Debug::ERROR) << "Database " << FileUtil::baseName(par.db2) << " is not a valid GPU database\n"`
`408`		`- << "Please call: makepaddedseqdb " << FileUtil::baseName(par.db2) << " " << FileUtil::baseName(par.db2) "_pad\n";`
	`408`	`+ << "Please call: makepaddedseqdb " << FileUtil::baseName(par.db2) << " " << FileUtil::baseName(par.db2) << "_pad\n";`
`409`	`409`	`EXIT(EXIT_FAILURE);`
`410`	`410`	`}`
`411`	`411`	`}`
Original file line number	Diff line number	Diff line change
`@@ -32,7 +32,7 @@ int gpuserver(int argc, const char **argv, const Command& command) {`
`32`	`32`	`const bool isGpuDb = DBReader<unsigned int>::getExtendedDbtype(dbr->getDbtype()) & Parameters::DBTYPE_EXTENDED_GPU;`
`33`	`33`	`if (isGpuDb == false) {`
`34`	`34`	`Debug(Debug::ERROR) << "Database " << FileUtil::baseName(par.db1) << " is not a valid GPU database\n"`
`35`		`- << "Please call: makepaddedseqdb " << FileUtil::baseName(par.db2) << " " << FileUtil::baseName(par.db2) "_pad\n";`
	`35`	`+ << "Please call: makepaddedseqdb " << FileUtil::baseName(par.db2) << " " << FileUtil::baseName(par.db2) << "_pad\n";`
`36`	`36`	`EXIT(EXIT_FAILURE);`
`37`	`37`	`}`
`38`	`38`