File tree 32 files changed +64
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lines changed
32 files changed +64
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lines changed Original file line number Diff line number Diff line change 11# PAM10
2+ # Background (precomputed optional): 0.07766 0.03092 0.05514 0.05448 0.04223 0.08321 0.02901 0.03984 0.08275 0.08452 0.01395 0.03728 0.05864 0.03950 0.04071 0.07601 0.05556 0.05770 0.01099 0.02991 0.00001
3+ # Lambda (precomputed optional): 0.34513
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 7 -10 -6 -5 -12 -4 -11 -8 -10 -9 -8 -7 -4 -7 -10 -3 -3 -5 -20 -11 -6
46C -10 10 -21 -20 -19 -13 -10 -9 -20 -21 -20 -17 -11 -20 -11 -6 -11 -9 -22 -7 -13
Original file line number Diff line number Diff line change 11# PAM100
2+ # Background (precomputed optional): 0.06947 0.03455 0.07300 0.03239 0.03950 0.10068 0.03732 0.04350 0.09240 0.07569 0.01186 0.01757 0.04407 0.04277 0.03835 0.07329 0.05499 0.07859 0.01254 0.02747 0.00001
3+ # Lambda (precomputed optional): 0.34508
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 4 -3 -1 0 -5 1 -3 -2 -3 -3 -2 -1 1 -2 -3 1 1 0 -7 -4 -1
46C -3 9 -7 -8 -7 -5 -4 -3 -8 -8 -7 -5 -4 -8 -5 -1 -4 -3 -9 -1 -5
Original file line number Diff line number Diff line change 11# PAM110
2+ # Background (precomputed optional): 0.09255 0.03195 0.05090 0.04371 0.03491 0.08280 0.03571 0.04177 0.08991 0.07037 0.01679 0.02821 0.05518 0.03123 0.03428 0.11003 0.03394 0.06698 0.01185 0.03694 0.00001
3+ # Lambda (precomputed optional): 0.34818
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 3 -3 -1 0 -4 1 -3 -1 -3 -3 -2 -1 1 -1 -3 1 1 0 -7 -4 -1
46C -3 9 -7 -7 -6 -5 -4 -3 -7 -8 -7 -5 -4 -7 -4 -1 -3 -3 -9 -1 -4
Original file line number Diff line number Diff line change 11# PAM120
2+ # Background (precomputed optional): 0.09508 0.03207 0.04145 0.06079 0.03360 0.08079 0.03328 0.03390 0.07939 0.10168 0.01162 0.04435 0.05162 0.02639 0.05219 0.04013 0.07668 0.05892 0.01118 0.03489 0.00001
3+ # Lambda (precomputed optional): 0.34997
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 3 -3 0 0 -4 1 -3 -1 -2 -3 -2 -1 1 -1 -3 1 1 0 -7 -4 -1
46C -3 9 -7 -7 -6 -4 -4 -3 -7 -7 -6 -5 -4 -7 -4 0 -3 -3 -8 -1 -4
Original file line number Diff line number Diff line change 11# PAM130
2+ # Background (precomputed optional): 0.09279 0.03221 0.04683 0.05288 0.04483 0.08180 0.02479 0.04990 0.07677 0.09507 0.01026 0.03186 0.04969 0.04310 0.05370 0.05572 0.05784 0.05482 0.01138 0.03374 0.00001
3+ # Lambda (precomputed optional): 0.34338
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 3 -3 0 0 -4 1 -2 -1 -2 -3 -2 0 1 -1 -3 1 1 0 -6 -4 -1
46C -3 9 -6 -6 -5 -4 -4 -3 -6 -7 -6 -4 -3 -6 -4 0 -3 -2 -8 -1 -4
Original file line number Diff line number Diff line change 11# PAM140
2+ # Background (precomputed optional): 0.07973 0.03324 0.06785 0.06270 0.04608 0.08204 0.03583 0.05305 0.06861 0.08888 0.01687 0.03047 0.04731 0.03358 0.04621 0.05083 0.05984 0.05092 0.01203 0.03393 0.00001
3+ # Lambda (precomputed optional): 0.33861
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 3 -2 0 0 -4 1 -2 -1 -2 -2 -2 0 1 -1 -2 1 1 0 -6 -4 -1
46C -2 9 -6 -6 -5 -4 -4 -3 -6 -7 -6 -4 -3 -6 -4 0 -3 -2 -8 -1 -4
Original file line number Diff line number Diff line change 11# PAM160
2+ # Background (precomputed optional): 0.08625 0.02678 0.06346 0.03951 0.03951 0.09517 0.04313 0.02268 0.10432 0.07943 0.01145 0.00249 0.05627 0.03704 0.02415 0.07011 0.07572 0.08561 0.01067 0.02623 0.00001
3+ # Lambda (precomputed optional): 0.35111
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 2 -2 0 0 -3 1 -2 -1 -2 -2 -1 0 1 -1 -2 1 1 0 -5 -3 0
46C -2 9 -5 -5 -5 -3 -3 -2 -5 -6 -5 -4 -3 -5 -3 0 -2 -2 -7 0 -3
Original file line number Diff line number Diff line change 11# PAM170
2+ # Background (precomputed optional): 0.11152 0.03214 0.04835 0.02832 0.04679 0.09725 0.02864 0.03092 0.08752 0.09134 0.00987 0.05342 0.04804 0.05011 0.04017 0.04956 0.04792 0.06299 0.01041 0.02471 0.00001
3+ # Lambda (precomputed optional): 0.23122
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 3 -3 0 0 -5 1 -3 -1 -2 -3 -2 0 1 -1 -3 2 2 0 -8 -5 -1
46C -3 13 -7 -8 -6 -5 -5 -3 -8 -9 -7 -5 -4 -8 -5 0 -3 -3 -10 0 -4
Original file line number Diff line number Diff line change 11# PAM180
2+ # Background (precomputed optional): 0.11481 0.02690 0.04900 0.07206 0.03731 0.08013 0.04349 0.05223 0.08574 0.08832 0.01252 0.00794 0.03867 0.02285 0.03715 0.11423 0.03321 0.04308 0.00892 0.03143 0.00001
3+ # Lambda (precomputed optional): 0.23847
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 3 -3 0 0 -5 1 -2 -1 -2 -3 -2 0 1 -1 -3 1 2 0 -8 -5 -1
46C -3 13 -7 -7 -6 -5 -4 -3 -7 -8 -7 -5 -4 -7 -5 0 -3 -3 -10 0 -4
Original file line number Diff line number Diff line change 11# PAM190
2+ # Background (precomputed optional): 0.11046 0.03056 0.05499 0.05495 0.03682 0.08966 0.04111 0.06123 0.08113 0.07986 0.01564 0.02788 0.05570 0.02737 0.03518 0.06281 0.04450 0.04793 0.01032 0.03187 0.00001
3+ # Lambda (precomputed optional): 0.23012
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 3 -3 0 0 -5 1 -2 -1 -2 -3 -2 0 1 -1 -2 1 2 0 -7 -4 0
46C -3 13 -7 -7 -6 -4 -4 -3 -7 -8 -7 -5 -4 -7 -5 0 -3 -3 -9 0 -4
Original file line number Diff line number Diff line change 11# PAM20
2+ # Background (precomputed optional): 0.09514 0.03010 0.04701 0.04750 0.04017 0.07864 0.03778 0.03389 0.07727 0.07935 0.01742 0.04493 0.05417 0.03521 0.03805 0.06349 0.06739 0.07367 0.01075 0.02804 0.00001
3+ # Lambda (precomputed optional): 0.34521
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 6 -8 -4 -3 -9 -3 -8 -6 -8 -7 -6 -5 -2 -5 -8 -1 -1 -3 -16 -9 -4
46C -8 10 -16 -16 -15 -11 -8 -7 -16 -17 -16 -13 -9 -16 -9 -4 -9 -7 -18 -5 -11
Original file line number Diff line number Diff line change 11# PAM40
2+ # Background (precomputed optional): 0.07681 0.03991 0.05302 0.05129 0.03709 0.09747 0.03162 0.04127 0.09232 0.07298 0.01387 0.04179 0.04715 0.03812 0.04357 0.06855 0.05319 0.06399 0.01006 0.02589 0.00001
3+ # Lambda (precomputed optional): 0.34607
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 6 -6 -3 -2 -7 -1 -6 -4 -6 -5 -4 -3 -1 -3 -6 0 0 -2 -12 -7 -3
46C -6 9 -12 -12 -11 -8 -7 -5 -12 -13 -12 -9 -7 -12 -7 -2 -7 -5 -14 -3 -8
Original file line number Diff line number Diff line change 11# PAM50
2+ # Background (precomputed optional): 0.09840 0.03831 0.04745 0.04700 0.03230 0.09266 0.02808 0.03292 0.08842 0.09667 0.01591 0.03736 0.04235 0.03443 0.04098 0.05936 0.07078 0.05319 0.00961 0.03380 0.00001
3+ # Lambda (precomputed optional): 0.34899
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 5 -5 -2 -1 -7 -1 -5 -3 -5 -5 -4 -2 0 -3 -5 0 0 -1 -11 -6 -2
46C -5 9 -11 -11 -10 -7 -6 -5 -11 -12 -11 -8 -6 -11 -6 -2 -6 -5 -13 -3 -7
Original file line number Diff line number Diff line change 11# PAM60
2+ # Background (precomputed optional): 0.07921 0.03546 0.04441 0.04110 0.04363 0.08175 0.03590 0.04001 0.07882 0.08930 0.01286 0.04795 0.05384 0.04398 0.03448 0.06773 0.05968 0.07068 0.00884 0.03037 0.00001
3+ # Lambda (precomputed optional): 0.35305
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 5 -5 -2 -1 -6 0 -5 -3 -5 -4 -3 -2 0 -3 -5 1 1 -1 -10 -6 -2
46C -5 9 -10 -10 -9 -7 -6 -4 -10 -11 -10 -7 -6 -10 -6 -1 -5 -4 -12 -2 -6
Original file line number Diff line number Diff line change 11# PAM70
2+ # Background (precomputed optional): 0.07759 0.03824 0.04909 0.05960 0.04431 0.08293 0.03596 0.03685 0.07970 0.08850 0.01405 0.03989 0.05563 0.03929 0.03580 0.06069 0.05288 0.06934 0.00989 0.02979 0.00001
3+ # Lambda (precomputed optional): 0.34210
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 5 -4 -1 -1 -6 0 -4 -2 -4 -4 -3 -2 0 -2 -4 1 1 -1 -9 -5 -2
46C -4 9 -9 -9 -8 -6 -5 -4 -9 -10 -9 -7 -5 -9 -5 -1 -5 -4 -11 -2 -6
Original file line number Diff line number Diff line change 11# PAM80
2+ # Background (precomputed optional): 0.09999 0.03564 0.03519 0.05417 0.03993 0.07534 0.03150 0.03550 0.07178 0.08343 0.01793 0.04985 0.05074 0.03864 0.04750 0.07369 0.06212 0.05961 0.00896 0.02848 0.00001
3+ # Lambda (precomputed optional): 0.34682
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 4 -4 -1 -1 -5 0 -4 -2 -4 -4 -3 -1 0 -2 -4 1 1 0 -8 -5 -1
46C -4 9 -9 -9 -8 -6 -5 -4 -9 -9 -8 -6 -5 -9 -5 -1 -4 -3 -10 -2 -5
Original file line number Diff line number Diff line change 11# PAM90
2+ # Background (precomputed optional): 0.09013 0.03325 0.04419 0.03474 0.03828 0.10537 0.02771 0.04824 0.09570 0.07713 0.01549 0.03356 0.04602 0.05609 0.03959 0.06940 0.05530 0.05461 0.00847 0.02671 0.00001
3+ # Lambda (precomputed optional): 0.35176
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 4 -3 -1 0 -5 0 -4 -2 -3 -3 -2 -1 0 -2 -4 1 1 0 -8 -5 -1
46C -3 9 -8 -8 -7 -5 -5 -3 -8 -9 -8 -6 -5 -8 -5 -1 -4 -3 -10 -1 -5
Original file line number Diff line number Diff line change 11# BLOSUM100 in 1/2 Bit
2+ # Background (precomputed optional): 0.07232 0.02954 0.05418 0.05682 0.04668 0.08126 0.02542 0.06514 0.05153 0.09522 0.02514 0.04121 0.03836 0.03335 0.04929 0.05778 0.05329 0.07261 0.01532 0.03553 0.00001
3+ # Lambda (precomputed optional): 0.34657
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 5.4032 -1.3914 -3.0411 -1.7843 -3.5667 -0.9429 -2.7743 -2.6285 -1.5480 -2.6564 -2.2890 -2.3818 -1.4407 -1.3900 -2.2348 0.9287 -0.5187 -1.0016 -4.1469 -3.5292 -1.0000
46C -1.3914 9.0527 -5.4848 -6.1579 -2.8088 -4.8414 -5.4005 -2.0578 -5.0581 -3.0318 -2.9747 -3.5406 -5.0881 -4.7305 -5.2752 -1.9639 -1.9677 -1.8493 -4.7523 -3.8063 -1.0000
Original file line number Diff line number Diff line change 11# BLOSUM30 in 1/2 Bit
2+ # Background (precomputed optional): 0.07484 0.02580 0.05398 0.06229 0.04472 0.07331 0.02855 0.05678 0.06049 0.09230 0.02177 0.04276 0.04327 0.03627 0.05858 0.06483 0.04742 0.06490 0.01264 0.03448 0.00001
3+ # Lambda (precomputed optional): 0.34657
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 1.5675 -1.0136 0.1920 -0.1870 -0.6023 -0.1721 -0.7992 -0.1637 -0.0888 -0.5876 0.2152 -0.1114 -0.3952 0.3636 -0.3792 0.3881 0.3304 0.3874 -1.8151 -1.6953 -1.0000
46C -1.0136 6.8039 -1.0074 0.2619 -1.0289 -1.5349 -2.0110 -0.6765 -1.2588 -0.1094 -0.9709 -0.4175 -1.3558 -0.8750 -0.8764 -0.7459 -0.8655 -0.9287 -0.6150 -2.4342 -1.0000
Original file line number Diff line number Diff line change 11# BLOSUM35 in 1/2 Bit
2+ # Background (precomputed optional): 0.07675 0.02859 0.05467 0.06102 0.04403 0.07880 0.02765 0.05617 0.06265 0.08708 0.02235 0.04351 0.04844 0.03517 0.05089 0.06122 0.04947 0.06349 0.01196 0.03608 0.00001
3+ # Lambda (precomputed optional): 0.34658
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 2.2600 -0.8033 -0.4171 -0.4171 -1.0258 0.1947 -0.8971 -0.4419 -0.2117 -0.8324 -0.0320 -0.3282 -0.8139 -0.0999 -0.4635 0.4745 0.1227 0.1557 -0.9101 -0.6432 -1.0000
46C -0.8033 7.4435 -1.5089 -0.4135 -1.8442 -1.6504 -1.9401 -1.8334 -0.9373 -1.0365 -1.7596 -0.7106 -2.1475 -1.7463 -1.4076 -1.3954 -0.4751 -1.2307 -2.2502 -2.4418 -1.0000
Original file line number Diff line number Diff line change 11# BLOSUM40 in 1/2 Bit
2+ # Background (precomputed optional): 0.07723 0.02509 0.05299 0.05957 0.04636 0.07778 0.02619 0.05969 0.06007 0.08917 0.02361 0.04253 0.04607 0.03559 0.04980 0.06117 0.05127 0.06743 0.01341 0.03497 0.00001
3+ # Lambda (precomputed optional): 0.34657
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 2.6312 -0.7811 -0.7041 -0.3993 -1.3685 0.2688 -1.1026 -0.6496 -0.3739 -0.9204 -0.2604 -0.3740 -0.8484 -0.1424 -0.7916 0.6828 0.0141 0.1203 -1.2891 -0.9677 -1.0000
46C -0.7811 7.7717 -1.1804 -1.0990 -1.2364 -1.4173 -2.0336 -1.8091 -1.2614 -1.1538 -1.5593 -1.0410 -2.2570 -2.0233 -1.6445 -0.5475 -0.4663 -1.0304 -2.8737 -2.1814 -1.0000
Original file line number Diff line number Diff line change 11# BLOSUM45 in 1/2 Bit
2+ # Background (precomputed optional): 0.07825 0.02350 0.04971 0.05809 0.04643 0.07498 0.02480 0.06190 0.06000 0.09376 0.02508 0.04187 0.04260 0.03591 0.05229 0.06118 0.05250 0.06998 0.01337 0.03378 0.00001
3+ # Lambda (precomputed optional): 0.34657
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 3.1219 -0.6424 -1.0751 -0.5545 -1.5354 0.2229 -1.2249 -0.8424 -0.6940 -0.9786 -0.5679 -0.6837 -0.9940 -0.4129 -1.0304 0.7577 0.0017 0.0285 -1.6451 -1.2935 -1.0000
46C -0.6424 8.1902 -1.8164 -1.7495 -1.4660 -1.6894 -2.0545 -1.7630 -1.7422 -1.1441 -1.4561 -1.1118 -2.5619 -2.0807 -2.1675 -0.6549 -0.5664 -0.9689 -3.1675 -2.0648 -1.0000
Original file line number Diff line number Diff line change 11# BLOSUM50 in 1/2 Bit
2+ # Background (precomputed optional): 0.07654 0.02232 0.05139 0.05645 0.04810 0.07385 0.02471 0.06406 0.05787 0.09559 0.02439 0.04364 0.04088 0.03492 0.05325 0.05948 0.05292 0.07243 0.01371 0.03349 0.00001
3+ # Lambda (precomputed optional): 0.34657
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 3.4217 -0.3440 -1.2002 -0.6534 -1.7445 0.2784 -1.2822 -0.9673 -0.8392 -1.2123 -0.4572 -0.9498 -0.9689 -0.5729 -1.1626 0.8948 -0.0958 -0.0535 -2.2183 -1.4913 -1.0000
46C -0.3440 8.3766 -2.4505 -2.2656 -1.6474 -1.8628 -1.9012 -1.5362 -2.2414 -1.2426 -1.1088 -1.4691 -2.6218 -2.1100 -2.4498 -0.5381 -0.5800 -0.6128 -3.3595 -1.7849 -1.0000
Original file line number Diff line number Diff line change 11# BLOSUM55 in 1/2 Bit
2+ # Background (precomputed optional): 0.07551 0.02329 0.05165 0.05540 0.04753 0.07381 0.02471 0.06597 0.05799 0.09572 0.02476 0.04361 0.04079 0.03452 0.05168 0.05945 0.05349 0.07350 0.01376 0.03283 0.00001
3+ # Lambda (precomputed optional): 0.34657
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 3.5985 -0.1914 -1.4300 -0.7792 -1.7950 0.1752 -1.4189 -1.0893 -0.8085 -1.3585 -0.6749 -1.1307 -0.9411 -0.6988 -1.2436 1.0043 -0.0148 -0.1057 -2.4213 -1.3825 -1.0000
46C -0.1914 8.4177 -2.7946 -2.8812 -1.8386 -2.1058 -2.3530 -1.3765 -2.6838 -1.3343 -1.3561 -1.9481 -2.2621 -2.4642 -2.8372 -0.6505 -0.4548 -0.6685 -2.6586 -2.1554 -1.0000
Original file line number Diff line number Diff line change 11# BLOSUM60 in 1/2 Bit
2+ # Background (precomputed optional): 0.07455 0.02446 0.05250 0.05498 0.04809 0.07334 0.02525 0.06677 0.05759 0.09865 0.02517 0.04341 0.03954 0.03429 0.05202 0.05820 0.05193 0.07318 0.01353 0.03255 0.00001
3+ # Lambda (precomputed optional): 0.34658
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 3.8330 -0.3290 -1.6674 -0.8762 -2.0947 0.1548 -1.5436 -1.1948 -0.7972 -1.3823 -0.9062 -1.3615 -0.9186 -0.7243 -1.3618 1.0699 -0.0520 -0.1445 -2.5631 -1.6290 -1.5000
46C -0.3290 8.5513 -3.3480 -3.4074 -2.2086 -2.3983 -2.8951 -1.4205 -3.0012 -1.3201 -1.4609 -2.4441 -2.6577 -2.7131 -3.3106 -0.7957 -0.7759 -0.8133 -2.1774 -2.3419 -1.5000
Original file line number Diff line number Diff line change 11# BLOSUM65 in 1/2 Bit
2+ # Background (precomputed optional): 0.07384 0.02532 0.05372 0.05357 0.04752 0.07423 0.02619 0.06814 0.05710 0.09988 0.02512 0.04410 0.03805 0.03341 0.05069 0.05769 0.05112 0.07277 0.01413 0.03341 0.00001
3+ # Lambda (precomputed optional): 0.34657
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 4.0449 -0.4496 -1.8345 -0.9003 -2.3286 0.1273 -1.7820 -1.3920 -0.7773 -1.5866 -1.0481 -1.6172 -0.8096 -0.9027 -1.4894 1.2390 -0.0893 -0.2379 -2.7099 -1.8384 -1.0000
46C -0.4496 8.6075 -3.5409 -3.9428 -2.2776 -2.7275 -3.3989 -1.1238 -3.2979 -1.3839 -1.5403 -2.8901 -3.0874 -3.1847 -3.6123 -0.8547 -1.0355 -0.8436 -2.4679 -2.4603 -1.0000
Original file line number Diff line number Diff line change 11# BLOSUM70 in 1/2 Bit
2+ # Background (precomputed optional): 0.07378 0.02662 0.05370 0.05401 0.04769 0.07521 0.02602 0.06776 0.05619 0.10126 0.02467 0.04386 0.03829 0.03370 0.05086 0.05649 0.04995 0.07258 0.01379 0.03356 0.00001
3+ # Lambda (precomputed optional): 0.34657
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 4.2364 -0.6025 -2.0030 -0.9681 -2.4888 0.0322 -1.8236 -1.5456 -0.8601 -1.7676 -1.1640 -1.7406 -0.6968 -0.9409 -1.6012 1.2304 -0.0530 -0.2960 -2.9000 -2.1049 -1.0000
46C -0.6025 8.6848 -3.7647 -4.3606 -2.3155 -3.1486 -3.7961 -1.3288 -3.6122 -1.6853 -1.7621 -3.2284 -3.2899 -3.0928 -3.8031 -1.0660 -1.2117 -1.1259 -2.5713 -2.7563 -1.0000
Original file line number Diff line number Diff line change 11# BLOSUM75 in 1/2 Bit
2+ # Background (precomputed optional): 0.07354 0.02718 0.05370 0.05405 0.04792 0.07522 0.02561 0.06770 0.05547 0.10137 0.02473 0.04341 0.03836 0.03350 0.05104 0.05635 0.04953 0.07295 0.01409 0.03427 0.00001
3+ # Lambda (precomputed optional): 0.34657
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 4.3642 -0.7178 -2.1931 -0.9795 -2.6320 -0.0249 -1.7879 -1.6727 -0.8608 -1.8902 -1.2384 -1.8504 -0.6599 -1.0315 -1.6979 1.2749 -0.0519 -0.3642 -3.2269 -2.2548 -1.0000
46C -0.7178 8.7214 -4.1131 -4.6349 -2.3973 -3.3654 -3.9849 -1.3474 -3.8023 -1.7590 -1.8353 -3.3280 -3.5396 -3.1068 -3.9359 -1.2667 -1.3033 -1.0931 -2.9623 -3.0434 -1.0000
Original file line number Diff line number Diff line change 11# BLOSUM80 in 1/2 Bit
2+ # Background (precomputed optional): 0.07265 0.02886 0.05363 0.05456 0.04711 0.07667 0.02542 0.06717 0.05479 0.09952 0.02444 0.04300 0.03821 0.03363 0.05042 0.05724 0.05013 0.07320 0.01449 0.03485 0.00001
3+ # Lambda (precomputed optional): 0.34657
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 4.5099 -0.9010 -2.2982 -1.0162 -2.6670 -0.1265 -1.9179 -1.7603 -0.9363 -1.9737 -1.3538 -1.9422 -0.7500 -1.0467 -1.6972 1.2358 -0.0594 -0.4155 -3.3860 -2.3937 -1.0000
46C -0.9010 8.7434 -4.4500 -4.9539 -2.6819 -3.7561 -4.3516 -1.5659 -4.1040 -2.0427 -2.0034 -3.4702 -3.7868 -3.5213 -4.2097 -1.5911 -1.4656 -1.3128 -3.4526 -3.3986 -1.0000
Original file line number Diff line number Diff line change 11# BLOSUM85 in 1/2 Bit
2+ # Background (precomputed optional): 0.07241 0.02955 0.05373 0.05433 0.04762 0.07823 0.02484 0.06684 0.05396 0.09840 0.02444 0.04238 0.03837 0.03327 0.04953 0.05766 0.05099 0.07315 0.01497 0.03531 0.00001
3+ # Lambda (precomputed optional): 0.34657
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 4.6981 -1.0333 -2.4616 -1.0636 -2.8537 -0.2870 -2.0836 -1.8760 -1.0253 -2.0833 -1.5008 -2.0214 -0.8475 -1.1129 -1.7680 1.1430 -0.0949 -0.5152 -3.4126 -2.5887 -1.0000
46C -1.0333 8.7626 -4.6810 -5.2816 -2.6773 -4.1137 -4.6265 -1.6864 -4.2989 -2.2496 -2.2177 -3.5713 -4.1308 -3.7838 -4.3161 -1.6358 -1.5048 -1.3429 -3.6143 -3.3450 -1.0000
Original file line number Diff line number Diff line change 11# BLOSUM90 in 1/2 Bit
2+ # Background (precomputed optional): 0.07255 0.02960 0.05411 0.05517 0.04651 0.07925 0.02489 0.06606 0.05338 0.09697 0.02440 0.04145 0.03866 0.03358 0.04920 0.05809 0.05160 0.07347 0.01537 0.03565 0.00001
3+ # Lambda (precomputed optional): 0.34657
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 4.9179 -1.1581 -2.5684 -1.1669 -3.0548 -0.4512 -2.2281 -2.1429 -1.1811 -2.3278 -1.7305 -2.1459 -0.9798 -1.3011 -1.8254 1.0777 -0.1948 -0.6666 -3.6358 -2.8667 -1.0000
46C -1.1581 8.8709 -5.0118 -5.5314 -2.6979 -4.3928 -4.7384 -1.8819 -4.4261 -2.4681 -2.4547 -3.5984 -4.2387 -4.0930 -4.5552 -1.8661 -1.7337 -1.5322 -3.9931 -3.5469 -1.0000
Original file line number Diff line number Diff line change 11# BLOSUM95 in 1/2 Bit
2+ # Background (precomputed optional): 0.07263 0.03008 0.05418 0.05500 0.04624 0.08061 0.02478 0.06573 0.05202 0.09555 0.02478 0.04167 0.03889 0.03344 0.04900 0.05856 0.05268 0.07357 0.01505 0.03552 0.00001
3+ # Lambda (precomputed optional): 0.34657
24 A C D E F G H I K L M N P Q R S T V W Y X
35A 5.1233 -1.2307 -2.7621 -1.4029 -3.2441 -0.6576 -2.5268 -2.3441 -1.3416 -2.4710 -1.9593 -2.2705 -1.2288 -1.2861 -1.9849 1.0225 -0.3233 -0.8255 -3.6874 -3.1432 -1.0000
46C -1.2307 8.9206 -5.2347 -5.9107 -2.7117 -4.5869 -4.9437 -1.9952 -4.8027 -2.7939 -2.6890 -3.5408 -4.7432 -4.4374 -4.8766 -1.9147 -1.9105 -1.7424 -4.3860 -3.7118 -1.0000
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