add disk writing manner and memoryprediction

soedinglab · Jan 20, 2025 · 648c635 · 648c635
1 parent 62a2ad4
commit 648c635
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Showing 4 changed files with 158 additions and 98 deletions.
diff --git a/src/commons/Parameters.cpp b/src/commons/Parameters.cpp
@@ -2515,9 +2515,9 @@ void Parameters::setDefaults() {
     resultDirection = Parameters::PARAM_RESULT_DIRECTION_TARGET;
     weightThr = 0.9;
     weightFile = "";
-    // TODO: change to true after fixing regression tests
-    matchAdjacentSeq = false;
+    matchAdjacentSeq = true;
     hashSeqBuffer = 1.05;
+    numDiskBuffer = 0;
 
     // result2stats
     stat = "";

diff --git a/src/commons/Parameters.h b/src/commons/Parameters.h
@@ -554,6 +554,7 @@ class Parameters {
     std::string weightFile;
     bool matchAdjacentSeq;
     float hashSeqBuffer;
+    int numDiskBuffer;
 
     // indexdb
     int checkCompatible;