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Fix parameter in masksequence
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Diff for: src/util/masksequence.cpp

+1-1
Original file line numberDiff line numberDiff line change
@@ -45,7 +45,7 @@ int masksequence(int argc, const char **argv, const Command& command) {
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#pragma omp for schedule(dynamic, 1)
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for (size_t id = 0; id < reader.getSize(); ++id) {
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seq.mapSequence(id, reader.getDbKey(id), reader.getData(id, thread_idx), reader.getSeqLen(id));
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masker.maskSequence(seq, par.mask, par.maskProb, par.maskLowerCaseMode, par.maskNrepeats);
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masker.maskSequence(seq, par.maskMode, par.maskProb, par.maskLowerCaseMode, par.maskNrepeats);
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memcpy(charSequence, seq.getSeqData(), seq.L * sizeof(char));
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masker.applySoftmasking(charSequence, seq.numSequence, seq.L);
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charSequence[seq.L] = '\n';

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