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Ryan Williams

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Ryan Williams

updated the visualization info and added a dataset to play with

Jul 27, 2015

b3f33b7 · Jul 27, 2015

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journal.pone.0081760.s004.csv

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1	LocusNum	Context	NonSynonymous	AnnotationType	AminoAcids	Codons	SNPPositiononProtein	RefGenomeID	PositionInRefGenome	Protein_GI	EC_number	locus_tag	gene	note	product	protein_id	function	primary_tag
2	119	AAAAAAATC.ATCAGGAAA	0	OnProtein	S_S	TCC_TCT	346	EcoO104H4_209EL-2071	3631161	407064277		O3O_07785		COG2199 FOG: GGDEF domain	membrane protein	AFS85324.1		CDS
3	188	AAAAAACCA.CAACCTTGA	0	UnannotatedRegion
4	264	AAAAAACTG.TCAAAAACC	0	OnProtein	E_E	GAA_GAG	140	EcoO104H4_209EL-2071	78175	407067695		O3O_25165		COG0262 Dihydrofolate reductase	dihydrofolate reductase	AFS88742.1		CDS
5	975	AAAAACGCG.TTTTTCTAC	1	OnProtein	A_T	ACG_GCG	67	EcoETEC_H10407	2141974	309702173		ETEC_1985			conserved hypothetical protein	CBJ01488.1		CDS
6	1956	AAAAATGCG.TTTCCGGTA	0	OnProtein	N_N	AAC_AAT	76	Eco53638	4261609	188490518		Ec53638_4379			conserved hypothetical protein	EDU65621.1		CDS
7	2272	AAAACAAGC.ATTACTTGG	1	OnProtein	N_Y	AAT_TAT	52	EcoO104H4_209EL-2071	3227526	407064655		O3O_09685			hypothetical protein	AFS85702.1		CDS
8	2329	AAAACACAG.AAAACTTAA	0	UnannotatedRegion
9	2400	AAAACACTG.CGCACTCCA	0	UnannotatedRegion
10	3070	AAAACCGGT.GGACTGAGT	0	OnProtein	V_V	GTC_GTT	134	EcoO104H4_209EL-2071	3196197	407064683		O3O_09840			hypothetical protein	AFS85730.1		CDS
11	4036	AAAACTTTG.CCGCGAAGC	0	OnProtein	G_G	GGA_GGG	107	EcoETEC_H10407	2134520	309702162		ETEC_1974			conserved hypothetical protein	CBJ01477.1		CDS
12	4131	AAAAGAAGA.CTGATTCAG	0	OnProtein	E_E	GAA_GAG	35	EcoO104H4_209EL-2071	3215465	407064667		O3O_09745			putative ATP-binding protein	AFS85714.1		CDS
13	5742	AAAATACGG.CAGGTGGAC	0	OnProtein	G_G	GGA_GGG	414	EcoNA114	909181	333968870		ECNA114_0852			Putative phage protein	AEG35675.1		CDS
14	9552	AAACCGCCG.GTCACCATG	1	OnProtein	A_S	GCG_TCG	83	Eco042	2611045	284922222	5.99.1.3	EC042_2471	gyrA		DNA gyrase subunit A	CBG35304.1		CDS
15	10548	AAACGCTCC.GAAATAAAC	0	OnProtein	R_R	AGA_CGA	25	Eco042	890676	284920579		EC042_0815	ninE		prophage protein	CBG33641.1		CDS
16	11678	AAACTGCAA.TACCTTCCA	1	OnProtein	K_N	AAA_AAT	17	Eco042	890654	284920579		EC042_0815	ninE		prophage protein	CBG33641.1		CDS
17	13044	AAAGATCAT.ATGCGCTTT	1	OnProtein	H_Y	CAT_TAT	97	EcoO104H4_209EL-2071	3216728	407064666		O3O_09740		COG2301 Citrate lyase beta subunit	hypothetical protein	AFS85713.1		CDS
18	13260	AAAGCAACG.GTGGTGAGT	1	OnProtein	C_R	CGT_TGT	18	EcoABU83972	1367983	307553145		ECABU_c13590			hypothetical protein encoded by prophage	ADN45920.1		CDS
19	13886	AAAGCGAAG.ACTATCAGC	1	OnProtein	D_N	AAC_GAC	384	Eco042	712504	284920405		EC042_0641			conserved hypothetical protein	CBG33466.1		CDS
20	14707	AAAGGCAGA.AAAGCAACG	0	OnProtein	E_E	GAA_GAG	14	EcoLF82	1002689	222032715		LF82_099		corresponding to LF82_p099 in publication : Miquel et al., PLoS One; CFT073; E2348	hypothetical protein	CAP75454.1		CDS
21	15038	AAAGGGATT.TGCTGCTGG	1	OnProtein	L_V	GTG_TTG	236	EcoO104H4_209EL-2071	2275955	407065619		O3O_14595		COG2199 FOG: GGDEF domain	diguanylate cyclase	AFS86666.1		CDS
22	16020	AAAGTTAAA.CTGCATAAA	0	NotProteinCoding				Eco53638	4565074	gene	locus_tag.location=4565053..4565232
23	16020	AAAGTTAAA.CTGCATAAA	0	NotProteinCoding				Eco53638	4565074	misc_RNA	locus_tag.location=4565053..4565232	product.location=4565053..4565232
24	16801	AAATACACC.AAAACAAAA	0	UnannotatedRegion
25	17368	AAATATCCT.CAATCCACC	1	OnProtein	K_Q	AAG_CAG	453	Eco042	5078737	284924433		EC042_4738			conserved hypothetical protein	CBG37558.1		CDS
26	17730	AAATCAATT.GTTATTGAA	0	UnannotatedRegion
27	20553	AAATTGCCG.CATTTTACC	1	OnProtein	A_V	GCC_GTC	216	Eco53638	3390372	188489615	1.3.1.-	Ec53638_3450	hcaB	identified by match to protein family HMM PF00106	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase	EDU64718.1		CDS
28	20627	AAATTGGTA.TAACGTTGA	1	OnProtein	N_S	AAT_AGT	140	EcoO104H4_209EL-2071	2364253	407065535		O3O_14155		COG1045 Serine acetyltransferase	putative acetyltransferase	AFS86582.1		CDS
29	20998	AACAAAAAA.CCATCAACC	0	NotProteinCoding				Eco53638	415300	gene	gene.location=415231..415309	locus_tag.location=415231..415309
30	20998	AACAAAAAA.CCATCAACC	0	NotProteinCoding				Eco53638	415300	misc_RNA	gene.location=415231..415309	locus_tag.location=415231..415309	product.location=415231..415309
31	22171	AACACCAGC.AACTGCATG	1	OnProtein	*_E	GAA_TAA	286	EcoO104H4_209EL-2071	3222441	407064660		O3O_09710		COG4245 Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain	TerY3	AFS85707.1		CDS
32	22976	AACAGCCTG.CCGTCAGGA	0	OnProtein	G_G	GGC_GGT	253	EcoO104H4_209EL-2071	2390393	407065498		O3O_13970		COG0582 Integrase	integrase	AFS86545.1		CDS
33	26231	AACCCTATA.AAACGTTCG	1	OnProtein	E_K	AAA_GAA	718	Eco53638	198513	188490250		Ec53638_0242			biofilm PGA synthesis protein PgaA	EDU65353.1		CDS
34	27459	AACCGTGCG.AGTGCTTCG	0	OnProtein	L_L	CTA_CTT	98	EcoETEC_H10407	2134493	309702162		ETEC_1974			conserved hypothetical protein	CBJ01477.1		CDS
35	27733	AACCTCTCC.GTTCGCTGT	1	OnProtein	C_R	CGT_TGT	397	EcoBL21DE3	311935	242376113		B21_00283	yahJ		predicted deaminase with metallo-dependent hydrolase domain	CAQ30800.1		CDS
36	28766	AACGAGGTG.AAATGATAT	0	UnannotatedRegion
37	30110	AACGCTGAT.CTGTCTCAC	0	OnProtein	I_I	ATC_ATT	54	Eco042	3951128	284923451		EC042_3722	rpoH		RNA polymerase sigma-32 factor	CBG36546.1		CDS
38	30174	AACGCTGGA.GCTGACGGC	0	OnProtein	E_E	GAA_GAG	75	EcoETEC_H10407	2148842	309702181		ETEC_1993			putative phage small terminase subunit	CBJ01496.1		CDS
39	30530	AACGGATTG.GTGGGCATC	1	OnProtein	H_R	CAC_CGC	66	EcoO104H4_209EL-2071	2388654	407065501		O3O_13985			hypothetical protein	AFS86548.1		CDS
40	32531	AACTATTGA.CAGAACGGT	0	OnProtein	E_E	GAA_GAG	283	Eco042	2451306	284922097		EC042_2341			fimbrial outer membrane usher protein	CBG35176.1		CDS
41	33640	AACTGTAAC.CTCTCCCCA	0	UnannotatedRegion
42	33770	AACTTAAAA.CTGCCGCTG	0	UnannotatedRegion
43	33898	AACTTCACG.GGAGAATGG	0	OnProtein	R_R	CGA_CGC	242	EcoO104H4_209EL-2071	3214176	407064669		O3O_09755			hypothetical protein	AFS85716.1		CDS
44	35077	AAGAATGAA.CCGGATATT	1	OnProtein	K_N	AAA_AAT	2	EcoABU83972	1170477	307552925		ECABU_c11320			hypothetical protein	ADN45700.1		CDS
45	35148	AAGAATTAT.AGAGCGGTA	1	OnProtein	E_Q	CAG_GAG	38	EcoO104H4_209EL-2071	2389346	407065499		O3O_13975		COG2944 Predicted transcriptional regulator	repressor protein C	AFS86546.1		CDS
46	35699	AAGAGCAAT.TCCTCGTTC	1	OnProtein	D_E	GAA_GAT	105	EcoABU83972	1367720	307553145		ECABU_c13590			hypothetical protein encoded by prophage	ADN45920.1		CDS
47	36332	AAGATGATG.CAAACCTAC	1	OnProtein	A_T	ACA_GCA	2	EcoO104H4_209EL-2071	2542670	407065339		O3O_13170			hypothetical protein	AFS86386.1		CDS
48	37114	AAGCAGCCA.CTGACTGCC	1	OnProtein	R_S	AGA_AGC	203	EcoO104H4_209EL-2071	3215194	407064668		O3O_09750		COG0561 Predicted hydrolases of the HAD superfamily	hypothetical protein	AFS85715.1		CDS
49	37172	AAGCAGGAT.AACGCCAGA	1	OnProtein	F_L	TTC_TTG	54	EcoO7K1_CE10	2514340	349738550		CE10_2487			hypothetical protein	AEQ13256.1		CDS
50	39941	AAGGAGCCA.TGATTATAT	0	OnProtein	Q_Q	CAA_CAG	39	EcoO104H4_209EL-2071	77872	407067695		O3O_25165		COG0262 Dihydrofolate reductase	dihydrofolate reductase	AFS88742.1		CDS
51	40417	AAGGCGCGA.CCCGACGCT	1	OnProtein	N_T	AAC_ACC	89	EcoO104H4_209EL-2071	4949068	407063061		O3O_01590		COG3541 Predicted nucleotidyltransferase	hypothetical protein	AFS84108.1		CDS
52	41346	AAGGTTCAC.CCGCTGTGA	0	OnProtein	G_G	GGG_GGT	301	EcoO104H4_209EL-2071	3213285	407064670		O3O_09760		COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit	hypothetical protein	AFS85717.1		CDS
53	41563	AAGTAAGTG.CGTCAGTGA	1	OnProtein	D_G	GAC_GGC	45	EcoETEC_H10407	2135432	309702165		ETEC_1977			conserved hypothetical protein	CBJ01480.1		CDS
54	42126	AAGTCGTCT.TAGGCGACT	0	UnannotatedRegion
55	42745	AAGTTAAAC.GTAAAATAA	1	OnProtein	G_S	AGT_GGT	76	EcoO104H4_209EL-2071	2364060	407065535		O3O_14155		COG1045 Serine acetyltransferase	putative acetyltransferase	AFS86582.1		CDS
56	44467	AATAATAAA.AAATCTATC	1	OnProtein	K_N	AAA_AAT	344	EcoO104H4_209EL-2071	3631155	407064277		O3O_07785		COG2199 FOG: GGDEF domain	membrane protein	AFS85324.1		CDS
57	47253	AATATGATA.ATAACAACG	0	UnannotatedRegion
58	47307	AATATGCGC.AAAGTATTA	0	OnProtein	F_F	TTC_TTT	35	Eco042	2871852	284922450		EC042_2704			putative signal transduction protein	CBG35537.1		CDS
59	48258	AATCAATGA.ATTTTCAAT	0	OnProtein	I_I	ATA_ATT	3	EcoO104H4_209EL-2071	77764	407067695		O3O_25165		COG0262 Dihydrofolate reductase	dihydrofolate reductase	AFS88742.1		CDS
60	52887	AATCTTTTT.ACTGAATGA	0	OnProtein	V_V	GTA_GTG	27	EcoNA114	964767	333968938		ECNA114_0920			Hypothetical protein	AEG35743.1		CDS
61	56603	AATGGTCAT.TGCGTGACT	1	OnProtein	K_R	AAA_AGA	67	EcoETEC_H10407	2135498	309702165		ETEC_1977			conserved hypothetical protein	CBJ01480.1		CDS
62	57380	AATGTGGAC.CATCGTGGA	0	UnannotatedRegion
63	57444	AATGTGTTA.CAGGAATCC	0	UnannotatedRegion
64	57838	AATTAAATG.TTAATTTCA	0	UnannotatedRegion
65	58333	AATTACCGG.GTTGCAGGA	1	OnProtein	A_E	GAG_GCG	306	Eco042	2422313	284922070		EC042_2315	mdtC		multidrug resistance protein	CBG35149.1		CDS
66	58449	AATTACTGG.GGCGAAGTG	1	OnProtein	G_R	AGG_GGG	68	Eco53638	1315236	188488068		Ec53638_1350		identified by match to protein family HMM PF00577	fimbrial usher protein	EDU63171.1		CDS
67	58883	AATTCACAG.CGAGGAAAT	1	OnProtein	A_D	GAC_GCC	124	EcoO104H4_209EL-2071	2582074	407065298		O3O_12965		COG3561 Phage anti-repressor protein	phage anti-repressor protein AntB	AFS86345.1		CDS
68	65394	ACACGTCGC.GGTCCGCGT	1	OnProtein	L_P	CCG_CTG	80	EcoO104H4_209EL-2071	2381245	407065514		O3O_14050			hypothetical protein	AFS86561.1		CDS
69	65656	ACACTGTTC.CGATTGCCC	1	OnProtein	P_S	CCG_TCG	656	Eco042	4749922	284924152		EC042_4427	uvrA		UvrABC system protein A (excinuclease ABC subunit A)	CBG37251.1		CDS
70	66230	ACAGATCAT.TATATGTCT	1	OnProtein	L_V	GTA_TTA	94	EcoO104H4_209EL-2071	78035	407067695		O3O_25165		COG0262 Dihydrofolate reductase	dihydrofolate reductase	AFS88742.1		CDS
71	66340	ACAGATTGA.GCTGGCGAA	1	OnProtein	D_E	GAG_GAT	33	Eco53638	3846708	188491376		Ec53638_3926		identified by match to protein family HMM PF00005	ABC transporter, ATP-binding protein	EDU66479.1		CDS
72	67053	ACAGCGTGA.AAGCTGGCA	0	OnProtein	E_E	GAA_GAG	77	EcoO104H4_209EL-2071	2385468	407065511		O3O_14035			phage replication protein	AFS86558.1		CDS
73	67258	ACAGGAAAG.GATAAAACC	0	OnProtein	R_R	AGA_AGG	139	EcoO104H4_209EL-2071	2535550	407065353		O3O_13240			hypothetical protein	AFS86400.1		CDS
74	67573	ACAGGCCAG.CTAAAGGGC	0	OnProtein	R_R	AGA_AGG	45	EcoO104H4_209EL-2071	2375231	407065520		O3O_14080			terminase, endonuclease subunit	AFS86567.1		CDS
75	68056	ACAGGTGCC.AAAAATTAG	1	OnProtein	K_Q	AAA_CAA	18	EcoO104H4_209EL-2071	2367110	407065533		O3O_14145		COG5301 Phage-related tail fibre protein	putative side tail fiber protein	AFS86580.1		CDS
76	68232	ACAGTAGCA.CGGATGTTG	1	OnProtein	A_S	GCG_TCG	183	EcoO104H4_209EL-2071	2364483	407065534		O3O_14150			putative tail fiber assembly protein	AFS86581.1		CDS
77	68961	ACATATTAG.AACCAACCA	0	NotProteinCoding				Eco042	2923451	misc_feature	note.location=2922497..2927740
78	71392	ACCACAAAA.CTGACGTTC	0	OnProtein	S_S	AGC_AGT	268	Eco53638	4536923	188489810		Ec53638_4683		identified by match to protein family HMM PF01408; match to protein family HMM PF02894	gfo/idh/mocA family	EDU64913.1		CDS
79	71465	ACCACACGG.CTGGCGTTG	0	OnProtein	G_G	GGA_GGG	64	EcoO104H4_209EL-2071	2385893	407065510		O3O_14030			hypothetical protein	AFS86557.1		CDS
80	72032	ACCACGTGC.CCCTGTAGC	0	OnProtein	G_G	GGG_GGT	232	EcoIHE3034	2659408	294491088		ECOK1_2573		identified by match to protein family HMM PF04860; match to protein family HMM TIGR01540	phage portal protein, PBSX family	ADE89844.1		CDS
81	72381	ACCAGAGCG.AGATAATCG	1	OnProtein	F_S	TCC_TTC	9	Eco042	1551330	284921246		EC042_1488			phage endopeptidase/lysis protein	CBG34312.1		CDS
82	73513	ACCATGCCT.GAATATCCG	1	OnProtein	L_P	CCA_CTA	87	Eco042	1156775	284920831		EC042_1072	torC		cytochrome c-type protein	CBG33894.1		CDS
83	73620	ACCATTACC.GTTATGCGT	0	OnProtein	P_P	CCC_CCG	62	EcoO104H4_209EL-2071	3230006	407064652		O3O_09670		COG1794 Aspartate racemase	aspartate racemase	AFS85699.1		CDS
84	73949	ACCCACCCC.CCTGACGGA	0	OnProtein	G_G	GGC_GGG	292	EcoO104H4_209EL-2071	3213258	407064670		O3O_09760		COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit	hypothetical protein	AFS85717.1		CDS
85	74679	ACCCGACAC.CATGTACGG	0	OnProtein	T_T	ACA_ACG	7	Eco042	5149649	284924499		EC042_4810			conserved hypothetical protein	CBG37633.1		CDS
86	75556	ACCCTGGTC.CGGGTTACC	0	OnProtein	R_R	CGC_CGT	23	EcoO104H4_209EL-2071	3213519	407064669		O3O_09755			hypothetical protein	AFS85716.1		CDS
87	76481	ACCGATCAC.CTAACCCGG	0	NotProteinCoding				EcoO104H4_209EL-2071	2527407	misc_feature	note.location=2526505..2528577
88	77828	ACCGCTGGC.CGGAAAATC	0	OnProtein	R_R	CGC_CGT	279	EcoO104H4_209EL-2071	4633614	407063356		O3O_03115		COG4227 Antirestriction protein	hypothetical protein	AFS84403.1		CDS
89	77956	ACCGCTTTC.GGATGTGCT	0	OnProtein	P_P	CCA_CCT	55	EcoO104H4_209EL-2071	2581108	407065301		O3O_12980			hypothetical protein	AFS86348.1		CDS
90	78567	ACCGGCCCC.AGCCCAACG	0	OnProtein	L_L	CTA_CTT	95	EcoO104H4_209EL-2071	3213735	407064669		O3O_09755			hypothetical protein	AFS85716.1		CDS
91	81072	ACCTGCGCG.AGAAAAAGC	0	UnannotatedRegion
92	81417	ACCTGTTGG.GACGCTGAA	1	OnProtein	A_V	GCG_GTG	165	Eco53638	1668992	188489905	2.6.1.57	Ec53638_1710	tyrB	identified by match to protein family HMM PF00155	aromatic-amino-acid transaminase	EDU65008.1		CDS
93	82916	ACGACCAGC.ATTGATCCG	0	OnProtein	A_A	GCC_GCT	14	EcoO104H4_209EL-2071	2385657	407065511		O3O_14035			phage replication protein	AFS86558.1		CDS
94	83188	ACGACGTCT.AGCCACCGG	0	OnProtein	L_L	CTA_CTC	52	EcoO104H4_209EL-2071	2542607	407065340		O3O_13175			NinE protein	AFS86387.1		CDS
95	86029	ACGCCTCCG.CGTTCACTC	1	OnProtein	A_G	GCC_GGC	57	EcoETEC_H10407	2168219	309702205		ETEC_2018		bacteriophage regulatory protein. bacteriophage regulatory protein	DNA-binding transcriptional regulator prophage remnant	CBJ01521.1		CDS
96	87196	ACGCTAACC.TTTCGCTAC	1	OnProtein	H_R	CAT_CGT	18	EcoO104H4_209EL-2071	2388798	407065501		O3O_13985			hypothetical protein	AFS86548.1		CDS
97	87509	ACGCTGAAG.CGTATCAGA	1	OnProtein	A_T	ACG_GCG	218	EcoIHE3034	2654404	294492024		ECOK1_2568		identified by match to protein family HMM PF05840	putative replication gene A protein	ADE90780.1		CDS
98	88192	ACGGAAAAA.GCTTAATTG	1	OnProtein	H_R	CAT_CGT	5	EcoO104H4_209EL-2071	2387438	407065506		O3O_14010			hypothetical protein	AFS86553.1		CDS
99	88531	ACGGATACC.CCGACGCAG	1	OnProtein	A_T	ACC_GCC	110	EcoO104H4_209EL-2071	2368256	407065531		O3O_14135		COG3948 Phage-related baseplate assembly protein	baseplate assembly protein	AFS86578.1		CDS
100	88734	ACGGCAACC.CACATAACT	1	OnProtein	A_V	GCG_GTG	100	EcoETEC_H10407	2163462	309702199		ETEC_2012			phage tail E family protein	CBJ01515.1		CDS
101	90340	ACGGTCGCA.CTGATGTTC	1	OnProtein	P_S	CCT_TCT	248	EcoO104H4_209EL-2071	2390376	407065498		O3O_13970		COG0582 Integrase	integrase	AFS86545.1		CDS
102	94136	ACTCAGAAG.GGCATTATA	0	UnannotatedRegion
103	94234	ACTCAGTAA.CAGCTATAC	0	OnProtein	K_K	AAA_AAG	145	EcoO104H4_209EL-2071	2582010	407065298		O3O_12965		COG3561 Phage anti-repressor protein	phage anti-repressor protein AntB	AFS86345.1		CDS
104	95433	ACTGAAAGA.CATGAACAG	0	OnProtein	E_E	GAA_GAG	162	EcoETEC_H10407	2155404	309702193		ETEC_2005	H	Similar to Bacteriophage P2 h probable tail fiber protein (gph). UniProt:P26700 (669 aa) fasta scores: E()=4.2e-63, 49.746% id in 788 aa, and C-terminus is similar to Shigella sonnei. bv' UniProt:Q53813 (EMBL:D00660 (318 aa) fasta scores: E()=2.3e-122, 95.597% id in 318 aa	probable tail fiber protein (gph)	CBJ01508.1		CDS
105	96582	ACTGCACTG.CCCCCGATC	1	OnProtein	A_S	GCC_TCC	102	Eco042	789217	284920475		EC042_0714			putative esterase/lipase	CBG33537.1		CDS
106	97613	ACTGGAAGC.TTCCATAAA	0	OnProtein	A_A	GCC_GCT	46	EcoETEC_H10407	2168187	309702205		ETEC_2018		bacteriophage regulatory protein. bacteriophage regulatory protein	DNA-binding transcriptional regulator prophage remnant	CBJ01521.1		CDS
107	99689	ACTGTTGGT.GCACTGCTG	0	OnProtein	A_A	GCA_GCG	474	EcoDH1	2448008	260449499		EcDH1_2274		PFAM: tail fiber repeat containing protein; tail fiber repeat 2 protein; Tail Collar domain protein; Prophage tail fibre domain protein; KEGG: ssn:SSON_2410 phage protein-related	Prophage tail fibre domain protein	ACX39921.1		CDS
108	101732	AGAAAATAC.TTGATGATA	1	OnProtein	I_V	ATT_GTT	37	EcoO104H4_209EL-2071	2543424	407065337		O3O_13160			Protein ninH from prophage	AFS86384.1		CDS
109	103161	AGAACTGAA.TCTGATTAC	0	OnProtein	N_N	AAC_AAT	155	EcoO104H4_209EL-2071	2581980	407065298		O3O_12965		COG3561 Phage anti-repressor protein	phage anti-repressor protein AntB	AFS86345.1		CDS
110	104279	AGAATAGGG.AATTCCGCC	0	UnannotatedRegion
111	104464	AGAATGACC.GGGGAGCCG	1	OnProtein	L_Q	CAG_CTG	355	EcoABU83972	2300316	307554037		ECABU_c22930	ibrA		immunoglobulin-binding regulator A	ADN46812.1		CDS
112	105054	AGACATAAA.ACGCCTTAA	0	UnannotatedRegion
113	105090	AGACATCCC.GTCGCCCTC	0	OnProtein	P_P	CCC_CCT	52	EcoO104H4_209EL-2071	3216595	407064666		O3O_09740		COG2301 Citrate lyase beta subunit	hypothetical protein	AFS85713.1		CDS
114	105299	AGACCCGGT.GCCCGTGCC	0	OnProtein	V_V	GTA_GTG	95	EcoO104H4_209EL-2071	2385414	407065511		O3O_14035			phage replication protein	AFS86558.1		CDS
115	105737	AGACGGACC.CATTTTCAG	0	OnProtein	P_P	CCA_CCG	119	EcoETEC_H10407	2150895	309702185		ETEC_1997			putative phage PS3	CBJ01500.1		CDS
116	106016	AGACTCCCC.ATGAGCGGC	0	OnProtein	I_I	ATC_ATT	634	EcoIHE3034	2655654	294492024		ECOK1_2568		identified by match to protein family HMM PF05840	putative replication gene A protein	ADE90780.1		CDS
117	110618	AGATTTAAT.GTCACTCCG	1	OnProtein	C_S	AGT_TGT	60	EcoO104H4_209EL-2071	2542629	407065340		O3O_13175			NinE protein	AFS86387.1		CDS
118	112294	AGCACTGAG.CGTATACCG	1	OnProtein	A_T	ACG_GCG	37	EcoO104H4_209EL-2071	3190460	407064691		O3O_09880			hypothetical protein	AFS85738.1		CDS
119	113559	AGCATGCCC.CCTGCGCTC	0	OnProtein	G_G	GGA_GGC	653	EcoO104H4_209EL-2071	2365203	407065533		O3O_14145		COG5301 Phage-related tail fibre protein	putative side tail fiber protein	AFS86580.1		CDS
120	114668	AGCCATAAA.TAAGCAACC	0	UnannotatedRegion
121	114728	AGCCATCAG.CACCTCCCA	1	OnProtein	A_V	GCC_GTC	394	EcoETEC_H10407	2164331	309702201		ETEC_2014			phage tail sheath protein	CBJ01517.1		CDS
122	117385	AGCGAGTCA.CTTGGGAAG	0	OnProtein	L_L	CTG_TTG	171	EcoO104H4_209EL-2071	1543566	407066321		O3O_18175		COG2207 AraC-type DNA-binding domain-containing proteins	putative DNA-binding protein, ARAC-type	AFS87368.1		CDS
123	118995	AGCGGCATT.CATCACCAT	1	OnProtein	F_L	TTA_TTC	48	EcoABU83972	987132	307552749	2.7.4.14	ECABU_c09480	cmk		cytidylate kinase	ADN45524.1		CDS
124	120693	AGCTCGCGT.ATTAGCAGA	0	OnProtein	V_V	GTA_GTG	74	EcoO104H4_209EL-2071	2581322	407065300		O3O_12975			hypothetical protein	AFS86347.1		CDS
125	121137	AGCTGGCAA.TGAAGGTAA	1	OnProtein	N_S	AAT_AGT	102	Eco042	5050095	284924410		EC042_4714	cybC		soluble cytochrome b562	CBG37534.1		CDS
126	121209	AGCTGGGCC.CAGGGCCCC	0	OnProtein	P_P	CCG_CCT	367	EcoO104H4_209EL-2071	2560392	407065318		O3O_13065			putative tail fiber protein	AFS86365.1		CDS
127	121519	AGCTTCCTG.TTTGTAGCC	0	OnProtein	K_K	AAA_AAG	84	EcoO83H1_NRG857C	1009208	312945528		NRG857_04640			putative recombination protein	ADR26355.1		CDS
128	121811	AGGAAAAAT.TGATACATA	0	NotProteinCoding				Shifl_2a_301	3806674	gene	db_xref.location=3592993..3952918	locus_tag.location=3592993..3952918
129	121811	AGGAAAAAT.TGATACATA	0	NotProteinCoding				Shifl_2a_301	3806674	misc_feature	note.location=3806606..3836346
130	122877	AGGATATTT.TTGCACGTC	0	UnannotatedRegion
131	123716	AGGCAGGGT.ACGGACGTC	0	OnProtein	V_V	GTC_GTT	26	EcoO104H4_209EL-2071	2359364	407065540		O3O_14180		COG3498 Phage tail tube protein FII	putative tail tube protein	AFS86587.1		CDS
132	125518	AGGCTTCTT.CTTCGCTTC	1	OnProtein	E_K	AAA_GAA	53	EcoO104H4_209EL-2071	2385542	407065511		O3O_14035			phage replication protein	AFS86558.1		CDS
133	125779	AGGGAGGTC.CTATGTTCC	0	UnannotatedRegion
134	125844	AGGGATCCG.ACGCGGCTG	0	OnProtein	V_V	GTA_GTC	76	EcoO104H4_209EL-2071	3214813	407064668		O3O_09750		COG0561 Predicted hydrolases of the HAD superfamily	hypothetical protein	AFS85715.1		CDS
135	126374	AGGGGAAGA.TCGACATCG	1	OnProtein	I_T	ACT_ATT	92	EcoO104H4_209EL-2071	3205405	407064678		O3O_09800		COG2963 Transposase and inactivated derivatives	IS66 transposase	AFS85725.1		CDS
136	127204	AGGTAGCGG.ACTGGAGCA	1	OnProtein	A_V	GCA_GTA	188	EcoO104H4_209EL-2071	2390197	407065498		O3O_13970		COG0582 Integrase	integrase	AFS86545.1		CDS
137	128865	AGTAACATC.GCAAACTCA	0	OnProtein	A_A	GCA_GCT	24	EcoO104H4_209EL-2071	2389306	407065499		O3O_13975		COG2944 Predicted transcriptional regulator	repressor protein C	AFS86546.1		CDS
138	130133	AGTCACGAC.TCACCCGGA	1	OnProtein	H_R	CAT_CGT	165	Eco53638	1844792	188489254		Ec53638_1874		identified by match to protein family HMM PF03406	putative phage protein	EDU64357.1		CDS
139	130581	AGTCCAGAG.AGTTTTACC	1	OnProtein	A_S	GCT_TCT	60	EcoO104H4_209EL-2071	49160	407067734		O3O_25360			hypothetical protein	AFS88781.1		CDS
140	137281	ATAAGAAAA.GTGAAAACA	0	UnannotatedRegion
141	137579	ATAAGGCAC.CTATCTCAC	0	UnannotatedRegion
142	139119	ATACATTCA.CAGCTTAAC	1	OnProtein	S_T	ACC_AGC	292	EcoNA114	3558063	333971535		ECNA114_3501	fliD		Flagellar capping protein FliD	AEG38340.1		CDS
143	139478	ATACCGGAG.GAAGAGAAA	0	OnProtein	S_S	AGC_AGT	87	EcoO104H4_209EL-2071	2581283	407065300		O3O_12975			hypothetical protein	AFS86347.1		CDS
144	139563	ATACCTGCA.CCTAAATAA	0	UnannotatedRegion
145	139736	ATACGCCGC.AGGACGGAA	1	OnProtein	*_W	TAG_TGG	366	EcoO104H4_209EL-2071	3233912	407064645		O3O_09635		COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase	hypothetical protein	AFS85692.1		CDS
146	142127	ATATAAGCG.ACGTTCACC	0	OnProtein	V_V	GTA_GTG	166	Eco042	680538	284920374		EC042_0610	pheP		phenylalanine-specific permease	CBG33435.1		CDS
147	142345	ATATATAAC.AAAAAGAGC	0	OnProtein	T_T	ACA_ACT	181	EcoO104H4_209EL-2071	2364377	407065535		O3O_14155		COG1045 Serine acetyltransferase	putative acetyltransferase	AFS86582.1		CDS
148	143466	ATATGGTGA.GGAATGCCG	1	OnProtein	D_E	GAG_GAT	89	EcoNA114	921458	333968887		ECNA114_0869			Hypothetical protein	AEG35692.1		CDS
149	144786	ATCAAATAA.CCCTGAAGA	0	OnProtein	G_G	GGA_GGG	24	EcoO104H4_209EL-2071	2386013	407065510		O3O_14030			hypothetical protein	AFS86557.1		CDS
150	146894	ATCAGCATC.AAACATTCC	1	OnProtein	F_L	TTA_TTC	743	EcoKO11FL	890919	323377234		EKO11_0853		KEGG: eoh:ECO103_3453 putative selenate reductase subunit YgfK; TIGRFAM: selenate reductase YgfK; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase	selenate reductase YgfK	ADX49502.1		CDS
151	147961	ATCATGATG.GCTTTTAAC	0	OnProtein	A_A	GCA_GCG	95	EcoO104H4_209EL-2071	3216724	407064666		O3O_09740		COG2301 Citrate lyase beta subunit	hypothetical protein	AFS85713.1		CDS
152	148735	ATCCAGATT.AACATCTCA	1	OnProtein	F_L	TTA_TTT	31	EcoCloneDi2	1307299	355419698		i02_1315			hypothetical protein	AER83895.1		CDS
153	150442	ATCCGCTTT.CTGACAGCG	1	OnProtein	R_S	AGG_AGT	59	EcoETEC_H10407	2163068	309702198		ETEC_2011			putative tail protein	CBJ01514.1		CDS
154	150696	ATCCGGGAT.GAAGAAATA	0	OnProtein	S_S	TCG_TCT	42	EcoO104H4_209EL-2071	3229946	407064652		O3O_09670		COG1794 Aspartate racemase	aspartate racemase	AFS85699.1		CDS
155	150888	ATCCGTCAG.GTGACACTG	0	OnProtein	S_S	AGC_AGT	129	EcoETEC_H10407	2152951	309702189		ETEC_2001			putative phage baseplate assembly protein V	CBJ01504.1		CDS
156	152670	ATCGCCAAC.TGTATAATC	0	OnProtein	L_L	CTG_TTG	39	Eco042	743859	284920435		EC042_0670	mrdA		penicillin-binding protein 2	CBG33496.1		CDS
157	156122	ATCTGATGT.AAAACCTTC	0	OnProtein	V_V	GTA_GTT	37	EcoO104H4_209EL-2071	2542562	407065340		O3O_13175			NinE protein	AFS86387.1		CDS
158	158202	ATGAATTAG.GCATCATCA	0	OnProtein	A_A	GCA_GCG	35	EcoO55H7_RM12579	304362	374357194		ECO55CA74_01345			hypothetical protein	AEZ38901.1		CDS
159	158547	ATGACGAGT.TCGTAGGCC	0	OnProtein	E_E	GAA_GAG	168	EcoO104H4_209EL-2071	2581941	407065298		O3O_12965		COG3561 Phage anti-repressor protein	phage anti-repressor protein AntB	AFS86345.1		CDS
160	159439	ATGATGCAG.CGCAGAACA	1	OnProtein	A_S	GCG_TCG	524	Eco53638	4003782	188489603	2.7.10.1	Ec53638_4096	wzc	identified by match to protein family HMM PF02706; match to protein family HMM TIGR01007	tyrosine-protein kinase wzc	EDU64706.1		CDS
161	162464	ATGGAGAGA.CCGATTTGA	1	OnProtein	N_S	AAC_AGC	28	EcoABU83972	1367952	307553145		ECABU_c13590			hypothetical protein encoded by prophage	ADN45920.1		CDS
162	164746	ATGTAGCTG.CAGGGCCCC	1	OnProtein	C_W	TGC_TGG	91	EcoP12b	496679	383101841		P12B_c0469			hypothetical protein	AFG39350.1		CDS
163	166170	ATTAAAATT.ATTTCATGA	0	OnProtein	I_I	ATC_ATT	368	Eco042	3998917	284923502		EC042_3773			conserved hypothetical protein	CBG36597.1		CDS
164	166253	ATTAAAGAC.CACCTCGCG	0	OnProtein	T_T	ACA_ACG	145	EcoO104H4_209EL-2071	3212817	407064670		O3O_09760		COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit	hypothetical protein	AFS85717.1		CDS
165	166861	ATTAATAGG.TCTGATGAA	0	OnProtein	E_E	GAA_GAG	30	Eco042	1972370	284921640		EC042_1886	arpB		putative type III effector protein (ankyrin repeat protein B)	CBG34712.1		CDS
166	168341	ATTATAAAG.TCTAAGAAT	0	UnannotatedRegion
167	168411	ATTATATTC.TCGCACGCC	0	UnannotatedRegion
168	169985	ATTCATCAA.AAATATATC	1	OnProtein	F_I	ATT_TTT	39	EcoO104H4_209EL-2071	2355689	407065543		O3O_14195			hypothetical protein	AFS86590.1		CDS
169	170394	ATTCCCCTT.TACCTGTCC	1	OnProtein	K_Q	AAA_CAA	159	EcoIHE3034	2751852	294490080		ECOK1_2677		identified by match to protein family HMM PF04447; match to protein family HMM PF04448	conserved hypothetical protein	ADE88836.1		CDS
170	170688	ATTCCTTAA.TGTCATATC	0	UnannotatedRegion
171	173056	ATTGCCGGA.TAACAAAAA	0	UnannotatedRegion
172	173341	ATTGCGTGA.GCCTTCCAG	0	OnProtein	A_A	GCA_GCC	10	EcoABU83972	4043923	307555644		ECABU_c39800			hypothetical protein	ADN48419.1		CDS
173	174447	ATTGTGTGC.CTTTGGGTG	1	OnProtein	A_T	ACT_GCT	67	EcoO104H4_209EL-2071	3260121	407064624		O3O_09530			hypothetical protein	AFS85671.1		CDS
174	174681	ATTTAAAAT.AATATATTA	0	UnannotatedRegion
175	175419	ATTTATTCA.AAGCTTGCA	0	UnannotatedRegion
176	176006	ATTTCTCGC.TTATTATCC	1	OnProtein	L_P	CCT_CTT	23	EcoUMNK88	3599896	332344925		UMNK88_3723			hypothetical protein	AEE58259.1		CDS
177	177365	ATTTTGCAG.GTCTCTAAA	0	OnProtein	T_T	ACA_ACT	720	Eco53638	234627	188489187		Ec53638_0275	torS	identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR02956	sensor histidine kinase/response regulator TorS	EDU64290.1		CDS
178	177833	ATTTTTGCA.TAAGCAGCG	0	OnProtein	L_L	CTA_TTA	77	EcoO104H4_209EL-2071	2388622	407065501		O3O_13985			hypothetical protein	AFS86548.1		CDS
179	179606	CAAACGCAT.CGCAAAAAA	0	OnProtein	I_I	ATC_ATT	11	EcoO104H4_209EL-2071	2389667	407065498		O3O_13970		COG0582 Integrase	integrase	AFS86545.1		CDS
180	181102	CAAATCCAT.CCCGCCAGC	0	OnProtein	G_G	GGA_GGC	43	Eco042	5170043	284924513		EC042_4826	gntP		high-affinity gluconate transporter	CBG37650.1		CDS
181	183513	CAACGAATG.CAATTAATC	1	OnProtein	*_W	TGA_TGG	37	EcoO7K1_CE10	5030807	349740883		CE10_4923	yjfL		inner membrane protein, UPF0719 family	AEQ15589.1		CDS
182	184116	CAACGGCGA.AGGGGAGCG	1	OnProtein	I_V	ATC_GTC	313	EcoO104H4_209EL-2071	3214387	407064669		O3O_09755			hypothetical protein	AFS85716.1		CDS
183	184275	CAACGGTTG.CGGATGCGG	1	OnProtein	A_V	GCC_GTC	10	EcoKO11FL	1849396	323378102		EKO11_1751		manually curated; KEGG: sfv:SFV_2308 ribonucleotide-diphosphate reductase subunit beta	hypothetical protein	ADX50370.1		CDS
184	185940	CAAGGAGCG.AGCGACTGG	0	UnannotatedRegion
185	188250	CAATGCTGC.GGATGCGGC	0	UnannotatedRegion
186	188696	CAATTCACA.CCGAGGAAA	1	OnProtein	A_T	ACC_GCC	124	EcoO104H4_209EL-2071	2582075	407065298		O3O_12965		COG3561 Phage anti-repressor protein	phage anti-repressor protein AntB	AFS86345.1		CDS
187	189434	CACAAGAAT.CGGTCAAAC	0	OnProtein	R_R	CGC_CGT	347	EcoO104H4_209EL-2071	3214491	407064669		O3O_09755			hypothetical protein	AFS85716.1		CDS
188	192257	CACCAGCCC.TCATTCATC	0	OnProtein	D_D	GAC_GAT	538	Eco042	4053526	284923549		EC042_3819			putative outer membrane assembly protein	CBG36644.1		CDS
189	192991	CACCATGGT.ATGGCCACA	0	OnProtein	V_V_V	GTA_GTG_GTT	149	EcoETEC_H10407	2155365	309702193		ETEC_2005	H	Similar to Bacteriophage P2 h probable tail fiber protein (gph). UniProt:P26700 (669 aa) fasta scores: E()=4.2e-63, 49.746% id in 788 aa, and C-terminus is similar to Shigella sonnei. bv' UniProt:Q53813 (EMBL:D00660 (318 aa) fasta scores: E()=2.3e-122, 95.597% id in 318 aa	probable tail fiber protein (gph)	CBJ01508.1		CDS
190	193489	CACCCGCAA.CTTGACCGC	0	OnProtein	N_N	AAC_AAT	89	EcoBL21DE3	3723945	242379196		B21_03483	aec79		aec79	CAQ34000.1		CDS
191	194945	CACCGGTAG.ATTCCTTAA	0	UnannotatedRegion
192	195751	CACCTGGCT.ATTGAAAAA	0	OnProtein	L_L	CTA_CTG	53	EcoO104H4_209EL-2071	2388692	407065501		O3O_13985			hypothetical protein	AFS86548.1		CDS
193	198373	CACGTCATT.ACGCGGGTC	0	OnProtein	V_V	GTC_GTT	54	EcoETEC_H10407	2165350	309702201		ETEC_2014			phage tail sheath protein	CBJ01517.1		CDS
194	199495	CACTGCCAC.GCAGGATCC	1	OnProtein	L_Q	CAG_CTG	35	Eco042	518316	284920244		EC042_0472			putative lipoprotein	CBG33303.1		CDS
195	200828	CAGAAACAT.AAAATCGGG	1	OnProtein	H_Y	CAT_TAT	7	Eco042	685484	284920379	6.3.-.-	EC042_0615	ybdK		carboxylate-amine ligase	CBG33440.1		CDS
196	205278	CAGCACTGA.ACGTATACC	0	OnProtein	E_E	GAA_GAG	36	EcoABU83972	1261123	307553029		ECABU_c12400			hypothetical protein	ADN45804.1		CDS
197	206669	CAGCATTGC.GCAAATACG	0	OnProtein	A_A	GCA_GCG	89	EcoO104H4_209EL-2071	2385818	407065510		O3O_14030			hypothetical protein	AFS86557.1		CDS
198	207903	CAGCCGGTT.TAACGCTGC	1	OnProtein	F_Y	TAT_TTT	640	EcoO104H4_209EL-2071	2365243	407065533		O3O_14145		COG5301 Phage-related tail fibre protein	putative side tail fiber protein	AFS86580.1		CDS
199	211403	CAGCTCGCG.AATTAGCAG	1	OnProtein	A_V	GCA_GTA	74	EcoO104H4_209EL-2071	2581323	407065300		O3O_12975			hypothetical protein	AFS86347.1		CDS
200	211659	CAGCTGGCC.AGCATATGG	0	OnProtein	L_L	CTC_CTT	108	EcoO104H4_209EL-2071	3214909	407064668		O3O_09750		COG0561 Predicted hydrolases of the HAD superfamily	hypothetical protein	AFS85715.1		CDS
201	212097	CAGGAAAAC.CTGTTGATG	0	NotProteinCoding				EcoO104H4_209EL-2071	2526741	misc_feature	note.location=2526505..2528577
202	213625	CAGGCGCTG.GAATCGATA	0	OnProtein	S_S	TCC_TCT	193	EcoO104H4_209EL-2071	3878275	407064033		O3O_06555		COG3696 Putative silver efflux pump	copper/silver efflux system, membrane component	AFS85080.1		CDS