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TSODBG

We reviewed some existing training set optimization methods, and proposed some new ones for training set optimization in genomic selection to discover the most favorable genotypes from a candidate population.

Installation

The TSODBG can be installed from GitHub:

library(devtools)
install_github("spcspin/TSODBG", dependencies = TRUE, force = TRUE)

Main functions

  • TSODBG: Function for discover the best genotypes.

Example dataset

The test dataset provided in this package is the tropical rice dataset which was published by Spindel et al. (2015) <doi.org/10.1371/journal.pgen.1004982>.

Authors

  • Szu-Ping Chen
    • Author, maintainer
    • E-mail: [email protected]
    • Department of Agronomy, National Taiwan University, Taipei, Taiwan
  • Wen-Hsiu Sung
    • Author
    • E-mail: [email protected]
    • Department of Agronomy, National Taiwan University, Taipei, Taiwan
  • Chen-Tuo Liao
    • Author, thesis advisor
    • E-mail: [email protected]
    • Department of Agronomy, National Taiwan University, Taipei, Taiwan