diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index edea244..e4c62f6 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -10,7 +10,7 @@ jobs: strategy: matrix: platform: [ubuntu-latest, macos-latest, windows-latest] - python-version: ['3.8', '3.10', '3.11', '3.12'] + python-version: ['3.10', '3.11', '3.12', '3.13'] defaults: run: shell: bash diff --git a/.github/workflows/publish-pypi.yml b/.github/workflows/publish-pypi.yml index d9f7eb1..7202717 100644 --- a/.github/workflows/publish-pypi.yml +++ b/.github/workflows/publish-pypi.yml @@ -9,11 +9,11 @@ jobs: deploy: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v2 + - uses: actions/checkout@v4 - name: Set up Python - uses: actions/setup-python@v2 + uses: actions/setup-python@v5 with: - python-version: '3.8' + python-version: '3.11' - name: Install dependencies run: | python -m pip install poetry diff --git a/.readthedocs.yaml b/.readthedocs.yaml index d41c6d9..cd11270 100644 --- a/.readthedocs.yaml +++ b/.readthedocs.yaml @@ -9,7 +9,7 @@ version: 2 build: os: ubuntu-22.04 tools: - python: "3.10" + python: "3.11" # Build documentation in the docs/ directory with Sphinx sphinx: diff --git a/docs/_static/custom.css b/docs/_static/custom.css index 9037637..5117a78 100644 --- a/docs/_static/custom.css +++ b/docs/_static/custom.css @@ -1,16 +1,41 @@ -:root { +html { --pst-color-primary: 92, 92, 92; - --pst-color-active-navigation: 231, 4, 136; - --pst-color-navbar-link: 231, 4, 136; - --pst-color-navbar-link-hover: 240, 40, 180; - --pst-color-navbar-link-active: 231, 4, 136; + --pst-color-active-navigation: #e70488; + --pst-color-navbar-link: #e70488; + --pst-color-navbar-link-active:#e70488; + --pst-color-inline-code-links: #e70488; } -.navbar-light .navbar-nav>.active>.nav-link { +h1 { + --pst-color-heading: #150458; +} + +h2 { + --pst-color-heading: #150458; +} + +h3 { + --pst-color-heading: #150458; +} + +.bd-header ul.navbar-nav > li.nav-item > .nav-link { + color: #e70488; + --pst-color-primary: #e70488; +} + +.bd-header ul.navbar-nav > li.nav-item.current > .nav-link { + color: #e70488; + --pst-color-primary: #e70488; font-weight: 800; - color: rgba(var(--pst-color-navbar-link-active),1); } +.bd-header ul.navbar-nav > li.nav-item > .nav-link:hover { + color: #e70488; + --pst-color-primary: #e70488; + --pst-color-secondary: #ffffff; + text-decoration: none; + } + dt:target, span.highlighted { background-color: rgba(255,255,255,1); } diff --git a/docs/conf.py b/docs/conf.py index a2569f9..36b4c8a 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -18,6 +18,7 @@ # for sphinx import os import sys +from datetime import datetime currentdir = os.path.dirname(os.path.abspath(inspect.getfile(inspect.currentframe()))) parentdir = os.path.dirname(currentdir) @@ -31,7 +32,7 @@ # -- Project information ----------------------------------------------------- project = "piso" -copyright = "2021, Riley Clement" +copyright = f"2021-{datetime.now().year}, Riley Clement" author = "Riley Clement" version = piso.__version__ if "untagged" in version: @@ -64,10 +65,10 @@ # "sphinx.ext.linkcode", "numpydoc", # handle NumPy documentation formatted docstrings] "nbsphinx", - "sphinx_panels", + "sphinx_design", ] -source_suffix = [".rst", ".ipynb"] +source_suffix = [".rst"] # Add any paths that contain templates here, relative to this directory. templates_path = ["_templates"] @@ -90,7 +91,7 @@ # sphinx-panels shouldn't add bootstrap css since the pydata-sphinx-theme # already loads it -panels_add_bootstrap_css = False +# panels_add_bootstrap_css = False # The name of the Pygments (syntax highlighting) style to use. pygments_style = "sphinx" @@ -121,10 +122,16 @@ html_theme = "pydata_sphinx_theme" html_theme_options = { - "google_analytics_id": "UA-65430466-3", "github_url": "https://github.com/staircase-dev/piso", + "navbar_end": ["navbar-icon-links"], } +html_theme_options["analytics"] = { + "google_analytics_id": "UA-65430466-3", +} + +html_show_sourcelink = False + html_logo = "img/piso_white.svg" html_favicon = "img/favicon.ico" @@ -134,6 +141,16 @@ # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ["_static"] +html_css_files = [ + "custom.css", +] + +html_context = { + # ... + "default_mode": "light" +} + def setup(app): - app.add_css_file("custom.css") + ... + # app.add_css_file("custom.css") diff --git a/docs/general_requirements.txt b/docs/general_requirements.txt index 380fc90..e5489b3 100644 --- a/docs/general_requirements.txt +++ b/docs/general_requirements.txt @@ -1,7 +1,7 @@ ipykernel -sphinx >= 5 +sphinx nbsphinx -sphinx-panels +sphinx-design staircase >= 2.1 pandas numpy @@ -9,4 +9,5 @@ Pygments pydata-sphinx-theme toml numpydoc -matplotlib >= 3.7 +matplotlib +pickleshare diff --git a/docs/getting_started/index.rst b/docs/getting_started/index.rst index 378b1c4..80a2142 100644 --- a/docs/getting_started/index.rst +++ b/docs/getting_started/index.rst @@ -52,7 +52,7 @@ License This project is licensed under the MIT License:: - Copyright © 2021 + Copyright © 2021-2025 Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software diff --git a/docs/release_notes/index.rst b/docs/release_notes/index.rst index 14e0eaa..88834a7 100644 --- a/docs/release_notes/index.rst +++ b/docs/release_notes/index.rst @@ -4,6 +4,10 @@ Release notes ======================== +- support for Numpy 2 added +- support for Python 3.13 added +- support for Python 3.8 removed + ADD UNRELEASED CHANGES ABOVE THIS LINE **v1.1.0 2024-06-25** diff --git a/docs/requirements.txt b/docs/requirements.txt index 0e5cabb..cb8d2ac 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -1,86 +1,87 @@ accessible-pygments==0.0.5 -alabaster==0.7.16 +alabaster==1.0.0 appnope==0.1.4 -asttokens==2.4.1 -attrs==23.2.0 -Babel==2.15.0 +asttokens==3.0.0 +attrs==24.3.0 +babel==2.16.0 beautifulsoup4==4.12.3 -bleach==6.1.0 -certifi==2024.6.2 -charset-normalizer==3.3.2 +bleach==6.2.0 +certifi==2024.12.14 +charset-normalizer==3.4.1 comm==0.2.2 -contourpy==1.2.1 +contourpy==1.3.1 cycler==0.12.1 -debugpy==1.8.1 +debugpy==1.8.11 decorator==5.1.1 defusedxml==0.7.1 docutils==0.21.2 -executing==2.0.1 -fastjsonschema==2.20.0 -fonttools==4.53.0 -idna==3.7 +executing==2.1.0 +fastjsonschema==2.21.1 +fonttools==4.55.3 +idna==3.10 imagesize==1.4.1 -ipykernel==6.29.4 -ipython==8.25.0 -jedi==0.19.1 -Jinja2==3.1.4 -jsonschema==4.22.0 -jsonschema-specifications==2023.12.1 -jupyter_client==8.6.2 +ipykernel==6.29.5 +ipython==8.31.0 +jedi==0.19.2 +Jinja2==3.1.5 +jsonschema==4.23.0 +jsonschema-specifications==2024.10.1 +jupyter_client==8.6.3 jupyter_core==5.7.2 jupyterlab_pygments==0.3.0 -kiwisolver==1.4.5 -MarkupSafe==2.1.5 -matplotlib==3.9.0 +kiwisolver==1.4.8 +MarkupSafe==3.0.2 +matplotlib==3.10.0 matplotlib-inline==0.1.7 -mistune==3.0.2 -nbclient==0.10.0 +mistune==3.1.0 +nbclient==0.10.2 nbconvert==7.16.4 nbformat==5.10.4 -nbsphinx==0.9.4 +nbsphinx==0.9.6 nest-asyncio==1.6.0 -numpy==1.26.4 -numpydoc==1.7.0 -packaging==24.1 -pandas==2.2.2 +numpy==2.2.1 +numpydoc==1.8.0 +packaging==24.2 +pandas==2.2.3 pandocfilters==1.5.1 parso==0.8.4 pexpect==4.9.0 -pillow==10.3.0 -platformdirs==4.2.2 -prompt_toolkit==3.0.47 -psutil==6.0.0 +pickleshare==0.7.5 +pillow==11.0.0 +platformdirs==4.3.6 +prompt_toolkit==3.0.48 +psutil==6.1.1 ptyprocess==0.7.0 -pure-eval==0.2.2 -pydata-sphinx-theme==0.15.3 +pure_eval==0.2.3 +pydata-sphinx-theme==0.16.1 Pygments==2.18.0 -pyparsing==3.1.2 +pyparsing==3.2.1 python-dateutil==2.9.0.post0 -pytz==2024.1 -pyzmq==26.0.3 +pytz==2024.2 +pyzmq==26.2.0 referencing==0.35.1 requests==2.32.3 -rpds-py==0.18.1 -six==1.16.0 +rpds-py==0.22.3 +six==1.17.0 snowballstemmer==2.2.0 -soupsieve==2.5 -Sphinx==7.3.7 -sphinx-panels==0.4.1 -sphinxcontrib-applehelp==1.0.8 -sphinxcontrib-devhelp==1.0.6 -sphinxcontrib-htmlhelp==2.0.5 +soupsieve==2.6 +Sphinx==8.1.3 +sphinx_design==0.6.1 +sphinxcontrib-applehelp==2.0.0 +sphinxcontrib-devhelp==2.0.0 +sphinxcontrib-htmlhelp==2.1.0 sphinxcontrib-jsmath==1.0.1 -sphinxcontrib-qthelp==1.0.7 -sphinxcontrib-serializinghtml==1.1.10 +sphinxcontrib-qthelp==2.0.0 +sphinxcontrib-serializinghtml==2.0.0 stack-data==0.6.3 -staircase==2.6.0 +staircase==2.7.0 tabulate==0.9.0 -tinycss2==1.3.0 +tinycss2==1.4.0 toml==0.10.2 -tornado==6.4.1 +tornado==6.4.2 traitlets==5.14.3 typing_extensions==4.12.2 -tzdata==2024.1 -urllib3==2.2.2 +tzdata==2024.2 +urllib3==2.3.0 wcwidth==0.2.13 webencodings==0.5.1 diff --git a/docs/user_guide/case_studies/index.rst b/docs/user_guide/case_studies/index.rst index 2b16d79..b1c0817 100644 --- a/docs/user_guide/case_studies/index.rst +++ b/docs/user_guide/case_studies/index.rst @@ -5,53 +5,47 @@ Case studies *************** -.. panels:: +.. grid:: 1 2 2 2 + :gutter: 4 - **Finding common gaps in daily calendars** + .. grid-item-card:: Finding common gaps in daily calendars - This case study introduces the use of :mod:`piso` for set operations such as :func:`piso.intersection` and :func:`piso.union` and applies it to an example where personal calendars are represented by interval arrays. + This case study introduces the use of :mod:`piso` for set operations such as :func:`piso.intersection` and :func:`piso.union` and applies it to an example where personal calendars are represented by interval arrays. - .. link-button:: calendar - :type: ref - :text: - :classes: stretched-link + .. button-ref:: user_guide.calendar_example + :ref-type: ref + :class: stretched-link + - --- + .. grid-item-card:: Verifying a maintenance schedule - **Verifying a maintenance schedule** + This case study introduces the use of :mod:`piso` for analysis with functions that return scalars, such as :func:`piso.issuperset` and :func:`piso.coverage`. In this example maintenance schedules and windows of opportunity are represented by interval arrays. - This case study introduces the use of :mod:`piso` for analysis with functions that return scalars, such as :func:`piso.issuperset` and :func:`piso.coverage`. In this example maintenance schedules and windows of opportunity are represented by interval arrays. + .. button-ref:: user_guide.maintenance_example + :ref-type: ref + :class: stretched-link - .. link-button:: maintenance - :type: ref - :text: - :classes: stretched-link - --- + .. grid-item-card:: Estimating tax payable - **Estimating tax payable** + This case study demonstrates the use of :func:`piso.lookup` where tax brackets are represented by a :class:`pandas.DataFrame`, indexed by a :class:`pandas.IntervalIndex`. The tax payable for an array of income values is calculated by efficiently finding the corresponding tax brackets. - This case study demonstrates the use of :func:`piso.lookup` where tax brackets are represented by a :class:`pandas.DataFrame`, indexed by a :class:`pandas.IntervalIndex`. The tax payable for an array of income values is calculated by efficiently finding the corresponding tax brackets. + .. button-ref:: user_guide.tax_example + :ref-type: ref + :class: stretched-link - .. link-button:: tax - :type: ref - :text: - :classes: stretched-link - --- + .. grid-item-card:: Analysis of scores in a football match - **Analysis of scores in a football match** + This case study introduces the idea of *joins* using :class:`pandas.IntervalIndex`. Using :func:`piso.join` a dataframe is constructed, indexed by intervals for unique score combinations in the 2009 Chelsea vs Liverpool Champions League quarter-final. - This case study introduces the idea of *joins* using :class:`pandas.IntervalIndex`. Using :func:`piso.join` a dataframe is constructed, indexed by intervals for unique score combinations in the 2009 Chelsea vs Liverpool Champions League quarter-final. + .. button-ref:: user_guide.football_example + :ref-type: ref + :class: stretched-link - .. link-button:: football - :type: ref - :text: - :classes: stretched-link - - .. toctree:: +.. toctree:: :hidden: :maxdepth: 1 diff --git a/docs/user_guide/faq.rst b/docs/user_guide/faq.rst index 4418837..ee20080 100644 --- a/docs/user_guide/faq.rst +++ b/docs/user_guide/faq.rst @@ -5,7 +5,6 @@ Frequently asked questions ========================== .. dropdown:: Can any interval be used with piso? - :container: + shadow Unfortunately no. The intervals must @@ -16,12 +15,10 @@ Frequently asked questions Operations between Intervals, IntervalIndex and IntervalArray objects must have the same value for their *closed* attribute. .. dropdown:: Are there plans to add support for intervals which are either degenerate (contain a single point), infinite length, or not half-closed? - :container: + shadow At this stage no, but this may change depending on the popularity of the package and the demand for this functionality. .. dropdown:: Are there existing set operations for intervals in pandas? - :container: + shadow Yes, but currently there are very few: @@ -49,7 +46,6 @@ Frequently asked questions Additional set operations for intervals, like those implemented in `piso`, are earmarked for development in :mod:`pandas` at some time in the future. .. dropdown:: Can I work with datetime/timestamp data? - :container: + shadow Yes :mod:`piso` will work with :class:`pandas.Timestamp` and :class:`pandas.Timedelta` data. Users who wish to use :class:`numpy.datetime64` and :class:`datetime.datetime` (and timedelta counterparts) should be aware that: @@ -57,12 +53,10 @@ Frequently asked questions - when using construction class methods, such as :meth:`pandas.IntervalIndex.from_arrays`, any datetime objects from :mod:`numpy` or :mod:`datetime` modules will be converted by :mod:`pandas` to the :mod:`pandas` equivalent. .. dropdown:: Why is there no `piso` accessor for `pandas.Interval`? - :container: + shadow Objects of type :class:`pandas.Interval` are immutable, meaning they cannot be changed (incuding the addition of an accessor). .. dropdown:: Why use accessors? - :container: + shadow Accessors provide a nice way of carving out a seperate namespace for `piso`, as opposed to monkey patching. This is particularly important for :class:`pandas.IntervalIndex`, which inherits methods from :class:`pandas.Index`, which are set based operations: diff --git a/poetry.lock b/poetry.lock index 41469d0..ae76e78 100644 --- a/poetry.lock +++ b/poetry.lock @@ -2,36 +2,36 @@ [[package]] name = "alabaster" -version = "0.7.13" -description = "A configurable sidebar-enabled Sphinx theme" +version = "0.7.16" +description = "A light, configurable Sphinx theme" optional = false -python-versions = ">=3.6" +python-versions = ">=3.9" files = [ - {file = "alabaster-0.7.13-py3-none-any.whl", hash = "sha256:1ee19aca801bbabb5ba3f5f258e4422dfa86f82f3e9cefb0859b283cdd7f62a3"}, - {file = "alabaster-0.7.13.tar.gz", hash = "sha256:a27a4a084d5e690e16e01e03ad2b2e552c61a65469419b907243193de1a84ae2"}, + {file = "alabaster-0.7.16-py3-none-any.whl", hash = "sha256:b46733c07dce03ae4e150330b975c75737fa60f0a7c591b6c8bf4928a28e2c92"}, + {file = "alabaster-0.7.16.tar.gz", hash = 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