Merge branch 'master' into release

Author: staircase-dev

.github/workflows/ci.yml

@@ -10,15 +10,15 @@ jobs:
     strategy:
       matrix:
         platform: [ubuntu-latest, macos-latest, windows-latest]
-        python-version: ['3.7', '3.8', '3.10', '3.11']
+        python-version: ['3.8', '3.10', '3.11', '3.12']
     defaults:
       run:
         shell: bash
 
     steps:
-    - uses: actions/checkout@v2
+    - uses: actions/checkout@v4
     - name: Set up Python ${{ matrix.python-version }}
-      uses: actions/setup-python@v2
+      uses: actions/setup-python@v5
       with:
         python-version: ${{ matrix.python-version }}
     - name: Upgrade pip
@@ -44,19 +44,19 @@ jobs:
       run: poetry run flake8 ./piso
     - name: Test with pytest
       run: |
-        poetry run pytest ./tests --junitxml=junit/test-results-${{ matrix.python-version }}.xml --cov=piso --cov-report=xml
+        poetry run pytest ./tests --junitxml=junit/test-results-${{ matrix.platform }}-${{ matrix.python-version }}.xml --cov=piso --cov-report=xml
         codecov
     - name: Upload pytest test results
-      uses: actions/upload-artifact@v2
+      uses: actions/upload-artifact@v4
       with:
-        name: pytest-results-${{ matrix.python-version }}
-        path: junit/test-results-${{ matrix.python-version }}.xml
+        name: pytest-results-${{ matrix.platform }}-${{ matrix.python-version }}
+        path: junit/test-results-${{ matrix.platform }}-${{ matrix.python-version }}.xml
       # Use always() to always run this step to publish test results when there are test failures
       if: ${{ always() }}
     - name: Upload coverage to Codecov
-      uses: codecov/codecov-action@v3
+      uses: codecov/codecov-action@v4
       with:
         token: ${{ secrets.CODECOV_TOKEN }}
-        fail_ci_if_error: true
+        fail_ci_if_error: false
 
 

.github/workflows/pre-commit.yml

@@ -11,6 +11,6 @@ jobs:
       group: ${{ github.ref }}-pre-commit
       cancel-in-progress: ${{github.event_name == 'pull_request'}}
     steps:
-    - uses: actions/checkout@v3
-    - uses: actions/setup-python@v3
+    - uses: actions/checkout@v4
+    - uses: actions/setup-python@v5
     - uses: pre-commit/[email protected]

docs/general_requirements.txt

@@ -1,5 +1,5 @@
 ipykernel
-sphinx
+sphinx >= 5
 nbsphinx
 sphinx-panels
 staircase >= 2.1
@@ -9,3 +9,4 @@ Pygments
 pydata-sphinx-theme
 toml
 numpydoc
+matplotlib >= 3.7

docs/release_notes/index.rst

@@ -5,6 +5,12 @@ Release notes
 ========================
 
 
+**v1.1.0 2024-06-25**
+
+- support for Python 3.12 added
+- support for Python 3.7 removed
+
+
 **v1.0.0 2023-07-05**
 
 - Compatibility with pandas 2

docs/requirements.txt

@@ -1,11 +1,86 @@
-ipykernel
-sphinx
-nbsphinx
-sphinx-panels
-staircase >= 2.1
-pandas
-numpy
-Pygments
-pydata-sphinx-theme
-toml
-numpydoc
+accessible-pygments==0.0.5
+alabaster==0.7.16
+appnope==0.1.4
+asttokens==2.4.1
+attrs==23.2.0
+Babel==2.15.0
+beautifulsoup4==4.12.3
+bleach==6.1.0
+certifi==2024.6.2
+charset-normalizer==3.3.2
+comm==0.2.2
+contourpy==1.2.1
+cycler==0.12.1
+debugpy==1.8.1
+decorator==5.1.1
+defusedxml==0.7.1
+docutils==0.21.2
+executing==2.0.1
+fastjsonschema==2.20.0
+fonttools==4.53.0
+idna==3.7
+imagesize==1.4.1
+ipykernel==6.29.4
+ipython==8.25.0
+jedi==0.19.1
+Jinja2==3.1.4
+jsonschema==4.22.0
+jsonschema-specifications==2023.12.1
+jupyter_client==8.6.2
+jupyter_core==5.7.2
+jupyterlab_pygments==0.3.0
+kiwisolver==1.4.5
+MarkupSafe==2.1.5
+matplotlib==3.9.0
+matplotlib-inline==0.1.7
+mistune==3.0.2
+nbclient==0.10.0
+nbconvert==7.16.4
+nbformat==5.10.4
+nbsphinx==0.9.4
+nest-asyncio==1.6.0
+numpy==1.26.4
+numpydoc==1.7.0
+packaging==24.1
+pandas==2.2.2
+pandocfilters==1.5.1
+parso==0.8.4
+pexpect==4.9.0
+pillow==10.3.0
+platformdirs==4.2.2
+prompt_toolkit==3.0.47
+psutil==6.0.0
+ptyprocess==0.7.0
+pure-eval==0.2.2
+pydata-sphinx-theme==0.15.3
+Pygments==2.18.0
+pyparsing==3.1.2
+python-dateutil==2.9.0.post0
+pytz==2024.1
+pyzmq==26.0.3
+referencing==0.35.1
+requests==2.32.3
+rpds-py==0.18.1
+six==1.16.0
+snowballstemmer==2.2.0
+soupsieve==2.5
+Sphinx==7.3.7
+sphinx-panels==0.4.1
+sphinxcontrib-applehelp==1.0.8
+sphinxcontrib-devhelp==1.0.6
+sphinxcontrib-htmlhelp==2.0.5
+sphinxcontrib-jsmath==1.0.1
+sphinxcontrib-qthelp==1.0.7
+sphinxcontrib-serializinghtml==1.1.10
+stack-data==0.6.3
+staircase==2.6.0
+tabulate==0.9.0
+tinycss2==1.3.0
+toml==0.10.2
+tornado==6.4.1
+traitlets==5.14.3
+typing_extensions==4.12.2
+tzdata==2024.1
+urllib3==2.2.2
+wcwidth==0.2.13
+webencodings==0.5.1

docs/user_guide/case_studies/calendar.rst

@@ -57,6 +57,7 @@ and where the values are instances of :class:`pandas.arrays.IntervalArray` and h
                 df["end"],
                 closed="left",
             ),
+            include_groups=False,
         )
     )
     meetings

docs/user_guide/case_studies/football.rst

@@ -99,7 +99,8 @@ Using this dataframe we will now provide answers for miscellaneous questions.  I
 .. ipython:: python
 
     CvsL.groupby("half").apply(
-        lambda df: df.query("score_liverpool - score_chelsea == 1").index.length.sum()
+        lambda df: df.query("score_liverpool - score_chelsea == 1").index.length.sum(),
+        include_groups=False,
     )
 
 **What was the score at the 80 minute mark?**

docs/user_guide/case_studies/maintenance.rst

@@ -54,6 +54,7 @@ where the values are instances of :class:`pandas.arrays.IntervalArray`.
                 df["end"],
                 closed="left",
             ),
+            include_groups=False,
         )
     )
     maintenance

piso/docstrings/accessor.py

@@ -955,7 +955,7 @@ def join_params(list_of_param_strings):
 or equal to the threshold.  Overlapping intervals will be merged, regardless of threshold value.
 
 The intervals are contained in the object the accessor belongs to.  They may be left-closed,
-right-closed, both, or neither, and contain overlapping intervals.
+or right-closed, and contain overlapping intervals.
 
 Parameters
 ----------

piso/docstrings/intervalarray.py

@@ -899,8 +899,8 @@ def join_params(list_of_param_strings):
 Given a set of intervals, and a threshold, merges intervals which are separated by a gap less than
 or equal to the threshold.  Overlapping intervals will be merged, regardless of threshold value.
 
-The intervals are contained in the object the accessor belongs to.  They may be left-closed,
-right-closed, both, or neither, and contain overlapping intervals.
+The intervals are contained in the object the accessor belongs to.  They may be left-closed or
+right-closed, and contain overlapping intervals.
 
 Parameters
 ----------

piso/ndframe.py

@@ -57,7 +57,7 @@ def _get_indexers(*dfs):
 
 
 def _handle_overlapping_columns(frames, suffixes):
-    col_counts = pd.Series.value_counts(list(itertools.chain.from_iterable(frames)))
+    col_counts = pd.Series(list(itertools.chain.from_iterable(frames))).value_counts()
     common_columns = col_counts[col_counts > 1].index
     if len(common_columns) > 0:
         if len(suffixes) != len(frames):