Request: FoldMason alignment of protein-protein interactions at scale #34
Description
Hello FoldMason team, I'm interested in the following: I have a series of proteins from different species that have known interactions with other proteins. These proteins bind to the same region in their target, but in slightly different ways. I would like to, at scale, see how the binding interaction changes in protein A even if protein B is the same for all proteins. To my knowledge, FoldMason does not support this kind of alignment yet. Ideally, I think being able to select which protein in the complex, as the other is being held constant, would be helpful. I can then use this output for downstream applications. Could you please let me know if this would be feasible to implement?