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Java App contig names #1

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PedalheadPHX opened this issue Mar 14, 2019 · 1 comment
Open

Java App contig names #1

PedalheadPHX opened this issue Mar 14, 2019 · 1 comment

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@PedalheadPHX
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The -add step does not work if the contig names include a "chr" prefix. I suspect there is an expectation that the contig name is a 1-2 character string to support 1-22, X, Y. This would require changes to the java app itself
@PedalheadPHX
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@sfacista was this corrected in the current jar I can't remember

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