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Markdups time #76

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PedalheadPHX opened this issue Nov 2, 2024 · 0 comments
Open

Markdups time #76

PedalheadPHX opened this issue Nov 2, 2024 · 0 comments

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@PedalheadPHX
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tempe/pipeline.yaml

Line 100 in 2e3d76d

container: ghcr.io/tgen/containers/samtools:1.17-23080815

There is a good chance we are running markdups much longer than needed given updates in 1.19, should consider an update for future proofing and limiting failures common due to the chr2 poly G region and other high depth region
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@PedalheadPHX