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ValueError When Aligning Slices #806

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DruncBread opened this issue Mar 8, 2025 · 1 comment
Open

ValueError When Aligning Slices #806

DruncBread opened this issue Mar 8, 2025 · 1 comment
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@DruncBread
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Hi,

I encountered ValueError when using code below

ap = AlignmentProblem(adata=adata_concat)
ap = ap.prepare(batch_key="batch", policy="star",reference=sample_ids[ref_idx])
ap = ap.solve()
ap.align(mode="warp", spatial_key="spatial", key_added="spatial_warp_sequential")

ap.align() function raised the error
Image

Would you mind helping me solve this problem? Thank you!

Best regards.

@MUCDK
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MUCDK commented Mar 9, 2025

@ArinaDanilina you've looked into that, haven't you?

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