From fe73ca69ab82c6cbfee2913ea11439dce5c68346 Mon Sep 17 00:00:00 2001 From: stemangiola Date: Mon, 5 Jun 2023 17:24:32 +1000 Subject: [PATCH 1/2] update actions --- .github/workflows/basic_checks.yaml | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/.github/workflows/basic_checks.yaml b/.github/workflows/basic_checks.yaml index 7e4ca99..a42787a 100644 --- a/.github/workflows/basic_checks.yaml +++ b/.github/workflows/basic_checks.yaml @@ -8,7 +8,7 @@ env: jobs: r-build-and-check: runs-on: ubuntu-latest - container: bioconductor/bioconductor_docker:RELEASE_3_15 + container: bioconductor/bioconductor_docker:RELEASE_3_16 env: R_REMOTES_NO_ERRORS_FROM_WARNINGS: true steps: @@ -17,10 +17,10 @@ jobs: - name: Query dependencies and update old packages run: | # We'll install the specific versions from the install instructions - BiocManager::install("stemangiola/tidyseurat@v0.5.4") - BiocManager::install("stemangiola/tidySingleCellExperiment@v1.9.1") - BiocManager::install("stemangiola/tidybulk@v1.11.1") - BiocManager::install("stemangiola/tidySummarizedExperiment@v1.9.2") + BiocManager::install("stemangiola/tidyseurat@v0.5.10") + BiocManager::install("stemangiola/tidySingleCellExperiment@v1.9.4") + BiocManager::install("stemangiola/tidybulk@v1.11.3") + BiocManager::install("stemangiola/tidySummarizedExperiment@v1.9.6") # Then install the other dependencies in the usual way BiocManager::install(ask=FALSE) From 6eb3ee790746ce3ae62142d9099c835ca5171533 Mon Sep 17 00:00:00 2001 From: stemangiola Date: Mon, 5 Jun 2023 18:04:58 +1000 Subject: [PATCH 2/2] update README --- README.md | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 4b2daa7..771def7 100644 --- a/README.md +++ b/README.md @@ -29,10 +29,11 @@ If you want to install the packages and material post-workshop, the instructions Sys.setenv("R_REMOTES_NO_ERRORS_FROM_WARNINGS" = "true") # Install same versions used in the workshop -BiocManager::install("stemangiola/tidyseurat@v0.5.4") -BiocManager::install("stemangiola/tidySingleCellExperiment@v1.9.1") -BiocManager::install("stemangiola/tidybulk@v1.11.1") -BiocManager::install("stemangiola/tidySummarizedExperiment@v1.9.2") + +BiocManager::install("stemangiola/tidyseurat@v0.5.10") +BiocManager::install("stemangiola/tidySingleCellExperiment@v1.9.4") +BiocManager::install("stemangiola/tidybulk@v1.11.3") +BiocManager::install("stemangiola/tidySummarizedExperiment@v1.9.6") # Install workshop package