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conda-environment.yml
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name: strandseqnation
channels:
- bioconda
- conda-forge
- defaults
- r
dependencies:
- bcftools=1.6=0
- bioconductor-biobase=2.38.0=r3.4.1_0
- bioconductor-biocgenerics=0.24.0=r3.4.1_0
- bioconductor-biocinstaller=1.28.0=r3.4.1_0
- bioconductor-biocparallel=1.12.0=r3.4.1_0
- bioconductor-biostrings=2.46.0=r3.4.1_0
- bioconductor-bsgenome=1.46.0=r3.4.1_0
- bioconductor-bsgenome.hsapiens.ucsc.hg38=1.4.1=r3.4.1_2
- bioconductor-delayedarray=0.4.1=r3.4.1_0
- bioconductor-fastseg=1.24.0=r3.4.1_0
- bioconductor-genomeinfodb=1.14.0=r3.4.1_0
- bioconductor-genomeinfodbdata=1.0.0=r3.4.1_1
- bioconductor-genomicalignments=1.14.0=r3.4.1_0
- bioconductor-genomicranges=1.30.0=r3.4.1_0
- bioconductor-iranges=2.12.0=r3.4.1_0
- bioconductor-rsamtools=1.30.0=r3.4.1_0
- bioconductor-rtracklayer=1.38.0=r3.4.1_0
- bioconductor-s4vectors=0.16.0=r3.4.1_0
- bioconductor-summarizedexperiment=1.8.0=r3.4.1_0
- bioconductor-xvector=0.18.0=r3.4.1_0
- bioconductor-zlibbioc=1.24.0=r3.4.1_0
- filechunkio=1.6=py36_0
- ftputil=3.2=py36_0
- htslib=1.6=0
- pysftp=0.2.9=py36_0
- r-data.table=1.10.4=r3.4.1_0
- r-peer=1.3=r3.4.1_0
- samtools=1.5=1
- snakemake=4.4.0=py36_0
- urllib3=1.12=py36_0
- aioeasywebdav=2.2.0=py36_0
- aiohttp=2.0.7=py36_0
- appdirs=1.4.3=py_0
- asn1crypto=0.22.0=py36_0
- async-timeout=1.2.1=py36_0
- boost=1.65.1=py36_0
- boost-cpp=1.65.1=0
- bzip2=1.0.6=1
- ca-certificates=2017.11.5=0
- cairo=1.14.6=4
- certifi=2017.11.5=py36_0
- cffi=1.11.2=py36_0
- chardet=3.0.4=py36_0
- cmake=3.10.0=4
- configargparse=0.12.0=py36_0
- cryptography=2.1.4=py36_0
- curl=7.54.1=0
- docutils=0.14=py36_0
- dropbox=7.3.1=py36_0
- expat=2.2.5=0
- fontconfig=2.12.1=4
- freetype=2.7=1
- gettext=0.19.7=1
- glib=2.51.4=0
- graphite2=1.3.10=0
- gsl=2.1=2
- harfbuzz=1.4.3=0
- icu=58.2=0
- idna=2.6=py36_1
- jpeg=9b=2
- krb5=1.14.2=0
- libffi=3.2.1=3
- libiconv=1.15=0
- libpng=1.6.34=0
- libssh2=1.8.0=1
- libtiff=4.0.9=0
- libuv=1.11.0=0
- libxml2=2.9.5=0
- multidict=2.1.4=py36_0
- ncurses=5.9=10
- openssl=1.0.2n=0
- pandas=0.22.0=py36_0
- pango=1.40.4=0
- paramiko=2.3.1=py_0
- pcre=8.39=0
- pip=9.0.1=py36_1
- pixman=0.34.0=1
- psutil=5.4.0=py36_0
- pyasn1=0.4.2=py_0
- pycparser=2.18=py36_0
- pynacl=1.1.2=py36_0
- python=3.6.4=0
- python-dateutil=2.6.1=py36_0
- pytz=2017.3=py_2
- pyyaml=3.12=py36_1
- r-assertthat=0.1=r3.4.1_0
- r-base=3.4.1=3
- r-bh=1.65.0_1=r3.4.1_0
- r-bitops=1.0_6=r3.4.1_0
- r-colorspace=1.3_2=r3.4.1_0
- r-cowplot=0.9.1=r3.4.1_0
- r-curl=2.4=r3.4.1_0
- r-devtools=1.13.2=r3.4.1_0
- r-dichromat=2.0_0=r3.4.1_0
- r-digest=0.6.12=r3.4.1_0
- r-futile.logger=1.4.3=r3.4.1_0
- r-futile.options=1.0.0=r3.4.1_0
- r-ggplot2=2.2.1=r3.4.1_0
- r-git2r=0.19.0=r3.4.1_0
- r-gridextra=2.3=r3.4.1_0
- r-gtable=0.2.0=r3.4.1_0
- r-hexbin=1.27.1=r3.4.1_0
- r-httr=1.2.1=r3.4.1_0
- r-jsonlite=1.4=r3.4.1_0
- r-labeling=0.3=r3.4.1_0
- r-lambda.r=1.1.9=r3.4.1_0
- r-lattice=0.20_34=r3.4.1_0
- r-lazyeval=0.2.0=r3.4.1_0
- r-magrittr=1.5=r3.4.1_0
- r-mass=7.3_45=r3.4.1_0
- r-matrix=1.2_7.1=r3.4.1_0
- r-matrixstats=0.52.2=r3.4.1_0
- r-memoise=1.1.0=r3.4.1_0
- r-mime=0.5=r3.4.1_0
- r-munsell=0.4.3=r3.4.1_0
- r-openssl=0.9.7=r3.4.1_0
- r-plyr=1.8.4=r3.4.1_0
- r-r6=2.2.0=r3.4.1_0
- r-rcolorbrewer=1.1_2=r3.4.1_0
- r-rcpp=0.12.13=r3.4.1_0
- r-rcurl=1.95_4.8=r3.4.1_0
- r-reshape2=1.4.2=r3.4.1_0
- r-rlang=0.1.2=r3.4.1_0
- r-rstudioapi=0.7=r3.4.1_0
- r-scales=0.5.0=r3.4.1_0
- r-snow=0.4_2=r3.4.1_0
- r-stringi=1.1.2=r3.4.1_0
- r-stringr=1.2.0=r3.4.1_0
- r-tibble=1.3.3=r3.4.1_0
- r-viridislite=0.2.0=r3.4.1_0
- r-whisker=0.3_2=r3.4.1_0
- r-withr=1.0.2=r3.4.1_0
- r-xml=3.98_1.6=r3.4.1_0
- ratelimiter=1.2.0=py36_0
- readline=7.0=0
- requests=2.13.0=py36_0
- rhash=1.3.4=0
- setuptools=38.4.0=py36_0
- six=1.11.0=py36_1
- sqlite=3.20.1=2
- tk=8.6.7=0
- wheel=0.30.0=py36_2
- wrapt=1.10.11=py36_0
- xz=5.2.3=0
- yaml=0.1.6=0
- yarl=0.10.0=py36_0
- zlib=1.2.11=0
- bcrypt=3.1.4=py36h621fe67_0
- intel-openmp=2018.0.0=hc7b2577_8
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=7.2.0=h7cc24e2_2
- libgfortran-ng=7.2.0=h9f7466a_2
- libstdcxx-ng=7.2.0=h7a57d05_2
- mkl=2018.0.1=h19d6760_4
- numpy=1.14.0=py36h3dfced4_0
- wget=1.18=0
prefix: /MMCI/TM/structvar/work/marschal/miniconda3/envs/strandseqnation