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Remove pique-input.log file unless debugging
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bin/pique-input

Lines changed: 4 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -1,5 +1,5 @@
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#!/usr/bin/perl -w
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#@(#)pique-input.pl 2021-05-24 A.J.Travis and A.Douglas
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#@(#)pique-input.pl 2021-05-26 A.J.Travis and A.Douglas
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#
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# PIQUE - Parallel Identification Of QTL's using EMMAX
@@ -1049,16 +1049,14 @@ sub output {
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Description : tidy up files unless debugging
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External : $opt_i = input prefix
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: $opt_o = output prefix
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Files : $rped_file = recoded .ped file
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: $rmap_file = recoded map file
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: "$opt_i_recode12.nosex"
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Files : "$opt_i_recode12.nosex"
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: "$opt_i_recode12.log"
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: "$opt_o.log"
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: "$opt_o-pique-input.log"
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=cut
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sub tidy_up {
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my @hit_list = <$opt_i*.nosex $opt_i*.log>;
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my @hit_list = <$opt_i*.nosex $opt_i*.log $opt_o*.log>;
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if ( defined $opt_v ) {
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print "removing temp files...\n";

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