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1 parent 15d2cb3 commit f395eb9Copy full SHA for f395eb9
test/Makefile
@@ -1,4 +1,4 @@
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-#@(#)Makefile 2021-05-24 A.J.Travis and A.Douglas
+#@(#)Makefile 2021-05-26 A.J.Travis and A.Douglas
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#
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# PIQUE - Parallel Identification Of QTL's using EMMAX
@@ -29,7 +29,7 @@ help:
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@echo "\tgroup"
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@echo "\ttest_vcf"
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@echo "\tld"
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- @echo "\tblocks
+ @echo "\tblocks"
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@echo "\tplot"
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@echo "\tall"
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@@ -72,7 +72,7 @@ test_vcf: test_vcf.vcf
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test_vcf.vcf: $(IPREFIX).ped $(IPREFIX).map
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$(PLINK) --file $(IPREFIX) --recode-vcf --out $(basename $@)
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-ld:
+ld: input
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$(PLINK) --file $(IPREFIX)_recode12 --r --out $(OPREFIX)_r
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$(PLINK) --file $(IPREFIX)_recode12 --r2 --out $(OPREFIX)_r2
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