From ff5b0c99810cd7827edd6350cd692d689154efe5 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Fr=C3=A9d=C3=A9ric=20Mah=C3=A9?= <frederic.mahe@cirad.fr>
Date: Fri, 28 Feb 2025 15:59:28 +0100
Subject: [PATCH] add checks for --fastq_minqual

---
 src/filter.cc | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/src/filter.cc b/src/filter.cc
index 8c629496..ee315a02 100644
--- a/src/filter.cc
+++ b/src/filter.cc
@@ -649,6 +649,10 @@ namespace {
     if (is_negative) {
       fatal("--fastq_truncee_rate cannot be negative");
     }
+
+    if (parameters.opt_fastq_minqual < 0) {
+      fatal("--fastq_minqual cannot be negative");
+    }
   }
 
 }  // end of anonymous namespace