Merge pull request #184 from tpapp/tp/test_with_aqua

tpapp · web-flow · commit c88a4b30c3e1 · 2023-06-08T17:26:44.000+02:00
test with Aqua, minor fixes
diff --git a/Project.toml b/Project.toml
@@ -1,7 +1,7 @@
 name = "DynamicHMC"
 uuid = "bbc10e6e-7c05-544b-b16e-64fede858acb"
 authors = ["Tamas K. Papp <tkpapp@gmail.com>"]
-version = "3.4.5"
+version = "3.4.6"
 
 [deps]
 ArgCheck = "dce04be8-c92d-5529-be00-80e4d2c0e197"
@@ -24,8 +24,8 @@ LogDensityProblems = "1, 2"
 LogExpFunctions = "0.3"
 MCMCDiagnosticTools = "0.2"
 ProgressMeter = "1"
-TensorCast = "0.4"
 SimpleUnPack = "1"
+TensorCast = "0.4"
 julia = "1.6"
 
 [extras]
diff --git a/README.md b/README.md
@@ -8,6 +8,7 @@ Implementation of robust dynamic Hamiltonian Monte Carlo methods in Julia.
 [![Documentation](https://img.shields.io/badge/docs-stable-blue.svg)](https://tpapp.github.io/DynamicHMC.jl/stable)
 [![Documentation](https://img.shields.io/badge/docs-master-blue.svg)](https://tpapp.github.io/DynamicHMC.jl/dev)
 [![DOI](https://zenodo.org/badge/93741413.svg)](https://zenodo.org/badge/latestdoi/93741413)
+[![Aqua QA](https://raw.githubusercontent.com/JuliaTesting/Aqua.jl/master/badge.svg)](https://github.com/JuliaTesting/Aqua.jl)
 
 ## Overview
 
diff --git a/src/NUTS.jl b/src/NUTS.jl
@@ -2,7 +2,7 @@
 ##### NUTS tree sampler implementation.
 #####
 
-export TreeOptionsNUTS
+export NUTS
 
 ####
 #### Trajectory and implementation
diff --git a/test/Project.toml b/test/Project.toml
@@ -1,4 +1,5 @@
 [deps]
+Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595"
 ArgCheck = "dce04be8-c92d-5529-be00-80e4d2c0e197"
 DocStringExtensions = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
 ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
diff --git a/test/runtests.jl b/test/runtests.jl
@@ -40,10 +40,17 @@ include("test_logging.jl")
 include("sample-correctness_tests.jl")
 
 ####
-#### statis analysis
+#### static analysis and QA
 ####
 
 # do not test on older Julia versions and nightly
 if VERSION >= v"1.7" && isempty(VERSION.prerelease)
     include("jet.jl")
 end
+
+@testset "Aqua" begin
+    import Aqua
+    Aqua.test_all(DynamicHMC; ambiguities = false)
+    # testing separately, cf https://github.com/JuliaTesting/Aqua.jl/issues/77
+    Aqua.test_ambiguities(DynamicHMC)
+end

Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,5 @@`
`1`	`1`	`[deps]`
	`2`	`+Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595"`
`2`	`3`	`ArgCheck = "dce04be8-c92d-5529-be00-80e4d2c0e197"`
`3`	`4`	`DocStringExtensions = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"`
`4`	`5`	`ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"`