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VariantData.from_tree_sequence #991

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hyanwong opened this issue Jan 16, 2025 · 0 comments
Open

VariantData.from_tree_sequence #991

hyanwong opened this issue Jan 16, 2025 · 0 comments

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@hyanwong
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In many cases we want to infer from an existing tree sequence. At the moment we use SampleData.from_tree_sequence(). Following on from VariantData.from_arrays() in #924 , I think it would also be useful to have the from_tree_sequence() method. This is in addition to sgkit-dev/bio2zarr#232 (which would provide essentially the same functionality).

I think this would be useful for writing the unit tests too.

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