rstudio-server-0.3.def

Bootstrap: docker
From: rocker/rstudio

%post
        sed -i "s/R_LIBS_USER='\/usr\/local\/lib\/R\/site-library'//" /usr/local/lib/R/etc/Renviron  # ensure that R_LIBS_USER set such that users can install packages in their home directory
        sed -i "s/R_LIBS=/R_LIBS_SITE=/" /usr/local/lib/R/etc/Renviron  # ensure that R_LIBS_USER takes precedence
        mkdir -p /global/scratch
        mkdir -p /global/home/users

%environment

# this runscript by default doesn't require authentication but still
# allows one to use
# PASSWORD=foo singularity run /path/to/file.img --auth-pam-helper-path /usr/lib/rstudio-server/bin/pam-helper --auth-none 0

%runscript
    /usr/lib/rstudio-server/bin/rserver "$@"

%startscript
    /usr/lib/rstudio-server/bin/rserver