DESCRIPTION

Package: ggstride
Type: Package
Title: An R Package for Protein 2D Structure Analysis and Visualization
Version: 1.0
Author: Umut Gerlevik
Date: 2020-12-22
URL: https://github.com/ugerlevik/ggstride
Maintainer: Umut Gerlevik <umut.gerlevik@gmail.com>
Description: Protein secondary structure analysis (with STRIDE) and visualization (with ggplot2) for trajectories.
            Three functions are included in this package:
            ssa() returns a data frame that contains residue identifiers (resname_chain_resid; e.g., MET_A_1) as column names and STRIDE assignments of each residue as each row for each frame of the trajectory.
            ssa_plot() returns a plot that contains percentage of secondary structures observed along the trajectories per residue by comparing the two ssa data frames obtained by ssa().
            ssa.pdb() returns a data frame that contains residue identifiers (resname_chain_resid; e.g., MET_A_1) as column names and STRIDE assignments of each residue as a row.
Imports: ggplot2, ggpubr, ggsci, reshape2, stringi, readr, bio3d, stats
License: UMUT GERLEVIK, 2020
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1