From 77db287f4cd5051c9d2e753dfc93ad28ebf15959 Mon Sep 17 00:00:00 2001 From: Knut Rand Date: Fri, 23 Mar 2018 18:41:19 +0100 Subject: [PATCH] recommented analyse peaks --- tests/mhc_test_data/run_mhc_benchmarking.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/mhc_test_data/run_mhc_benchmarking.sh b/tests/mhc_test_data/run_mhc_benchmarking.sh index 16177be..488120f 100755 --- a/tests/mhc_test_data/run_mhc_benchmarking.sh +++ b/tests/mhc_test_data/run_mhc_benchmarking.sh @@ -12,7 +12,7 @@ fimo -oc fimo_macs_sequences MA0139.1.meme macs_sequences_mhc.fasta # Motif enrichment graph_peak_caller plot_motif_enrichment test_sequences.fasta macs_sequences_mhc.fasta MA0139.1.meme plot.png True CTCF -graph_peak_caller analyse_peaks graph.obg haplo1kg50-mhc.json macs_sequences_mhc.fasta test_sequences.fasta fimo_test_sequences/fimo.txt fimo_macs_sequences_mhc/fimo.txt chr6 28510119 33480577 +# graph_peak_caller analyse_peaks -g graph.nobg haplo1kg50-mhc.json macs_sequences_mhc.fasta test_sequences.fasta fimo_test_sequences/fimo.txt fimo_macs_sequences_mhc/fimo.txt chr6 28510119 33480577 #ls plot.png