From 7c53c979d70922bfbb9b33dc2d3951c0595d07f6 Mon Sep 17 00:00:00 2001
From: Oliver Stolpe <oliver.stolpe@bih-charite.de>
Date: Tue, 3 Dec 2024 15:35:10 +0100
Subject: [PATCH] fix: use conda only in cadd scripts

---
 restapi/tasks.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/restapi/tasks.py b/restapi/tasks.py
index 58920b0..3ff792b 100644
--- a/restapi/tasks.py
+++ b/restapi/tasks.py
@@ -39,7 +39,7 @@ def annotate_background_job(_self, bgjob_uuid):
                 "bash",
                 "-xc",
                 (
-                    "{conda_activate}{cadd_sh} -a -g {genome_build} -v {cadd_release} "
+                    "{conda_activate}{cadd_sh} -m -a -g {genome_build} -v {cadd_release} "
                     "-o {tmpdir}/out.tsv.gz {tmpdir}/in.vcf"
                 ).format(
                     conda_activate=("source %s; " % CADD_CONDA) if CADD_CONDA else "",