| title | description | published | date | tags | editor |
|---|---|---|---|---|---|
Network Data Exchange |
The NDEx Project provides an open-source framework where scientists and organizations can share, store, manipulate, and publish biological network knowledge. |
true |
2020-08-16 02:05:59 UTC |
community, genes, proteins, database, data visualization, interaction, networks |
markdown |
The NDEx Project provides an open-source framework where scientists and organizations can share, store, manipulate, and publish biological network knowledge. The NDEx Project maintains a free, public website; alternatively, users can also decide to run their own copies of the NDEx Server software in cases where the stored networks must be kept in a highly secure environment (such as for HIPAA compliance) or where high application load is incompatible with a shared public resource. {.is-info}
- NDEx Network Data Exchange Home Page {.links-list}
- Allows for analyses of list of genes/proteins on landing page
- Allows for in-browser visualization and data export of networks
- Limited only by the number of networks curated by the site
- May require some awareness or familiarity of networks and data formats in order to more easily navigate the results page upon a query
- Relatively easy-to-use if comfortable with conventions common in naming proteins/genes, GO terms or pathways; surprisingly quick loading speeds, despite amounts of data to be reviewed (true for visualizations and query results)
- FAQ Frequently Asked Questions
- Tool Documentation includes Quick Start Guide, tutorials {.links-list}
- Dexter Pratt, et al. NDEx, the Network Data Exchange. Cell Systems, Volume 1, Issue 4, 302-305 (2015). DOI:/10.1016/j.cels.2015.10.001. {.grid-list}