% VCFREMOVEABERRANTGENOTYPES(1) vcfremoveaberrantgenotypes (vcflib) | vcfremoveaberrantgenotypes (VCF transformation) % Erik Garrison and vcflib contributors
vcfremoveaberrantgenotypes
vcfremoveaberrantgenotypes
strips samples which are homozygous but have observations implying heterozygosity. Remove samples for which the reported genotype (GT) and observation counts disagree (AO, RO).
Type: transformation
0 : Success
not 0 : Failure
vcflib(1)
vcfremoveaberrantgenotypes.cpp
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.