Fix tests to use cmake build directory. Also added lzma for htslib

Author: pjotrp

test/Makefile

@@ -5,18 +5,18 @@
 
 CC=gcc
 CXX=g++
-CFLAGS=-Wall -std=c++0x 
-LINKERS=-lm -lpthread -lhts -lvcflib -lz 
-INCLUDE=-I../src -I../googletest/googletest/include/ -I../tabixpp/ -I../tabixpp/htslib/ -I ../smithwaterman/ -I ../multichoose/ -I ../filevercmp/ -I ../googletest/googletest/make/
-LIB=-L../lib -L../tabixpp/htslib -L../tabixpp/htslib/ -L../googletest/googletest/make/
+CFLAGS=-Wall -std=c++0x
+LINKERS=-lm -lpthread -lhts -lvcflib -lz
+INCLUDE=-I../src -I../googletest/googletest/include/ -I../fastahack -I../tabixpp/ -I../tabixpp/htslib/ -I ../smithwaterman/ -I ../multichoose/ -I ../filevercmp/ -I ../googletest/googletest/make/
+LIB=-L../build -L../tabixpp/htslib -L../tabixpp/htslib/ -L../googletest/googletest/make/ -lcurl -llzma -lbz2
 LIBGTEST=../googletest/googletest/make/gtest_main.a
-LIBVCF=../lib/libvcflib.a
+LIBVCF=../build/libvcflib.a
 all: run
 
 ../googletest/googletest/make/gtest_main.a:
 	cd ../googletest/googletest/make/ && make
 tests/main: ../googletest/googletest/make/gtest_main.a
-	$(CXX) $(CFLAGS) $(INCLUDE) $(LIB) $(LINKERS) tests/mainTest.cpp ../tabixpp/tabix.cpp ../tabixpp/htslib/libhts.a $(LIBVCF) $(LIBGTEST) -o tests/main 
+	$(CXX) $(CFLAGS) $(INCLUDE) $(LIB) $(LINKERS) tests/mainTest.cpp ../tabixpp/tabix.cpp ../tabixpp/htslib/libhts.a $(LIBVCF) $(LIBGTEST) -o tests/main
 run: tests/main
 	./tests/main
 clean: