Workflows (#51)

* first attempt

* Update setup.py

* typo

* some tests

* ignore failing test for now

just to make PR less confusing to review

* Update default.py

* codeql

* move some scripts to tests

some tests still need to be written

* Update heterodyne.py

Author: ddkohler

WrightSim/experiment/_scan.py

@@ -259,7 +259,7 @@ def efields(self, windowed=None):
         efields_shape = list(efp.shape)
         if windowed == self.windowed:
             efields_shape[-1] = self.iprime
-            efields = np.zeros((efields_shape), dtype=np.complex)
+            efields = np.zeros((efields_shape), dtype=np.complex128)
             with wt.kit.Timer():
                 for ind in np.ndindex(tuple(efields_shape[:-2])):
                     efi = self.pulse_class.pulse(efp[ind], self.t_args, pm=self.pm)
@@ -272,7 +272,7 @@ def efields(self, windowed=None):
             else:
                 efields_shape[-1] = self.t.size
 
-            efields = np.zeros((efields_shape), dtype=np.complex)
+            efields = np.zeros((efields_shape), dtype=np.complex128)
             with wt.kit.Timer():
                 for ind in np.ndindex(tuple(efields_shape[:-2])):
                     efi = self.pulse_class.pulse(efp[ind], self.t_args, pm=self.pm)

scripts/test_default_phase_delay_dependence.py

@@ -0,0 +1,88 @@
+"""
+look at the phase fringes ddue to interference with each pulse
+
+E1 interference (first column) should modulate along y-axis
+E2 interference (second column) should modulate along diagonal
+E2p interference (third column) should modulate along x-axis
+
+simulated and driven experiments (top and bottom rows, resp.)
+should have the same phase of fringes
+"""
+
+
+import WrightSim as ws
+import WrightTools as wt
+import numpy as np
+
+dt = 50
+nt = 21
+wn_to_omega = 2 * np.pi * 3e-5  # cm / s
+w_central = 3000
+coupling = 0
+
+ham = ws.hamiltonian.Hamiltonian(
+    w_central=w_central * wn_to_omega,
+    coupling=coupling * wn_to_omega,
+)
+ham.recorded_elements = [7, 8]
+
+exp = ws.experiment.builtin('trive')
+exp.w1.points = w_central  # wn
+exp.w2.points = w_central  # wn
+exp.d2.points = np.linspace(-10, 10, nt)  # fs
+exp.d1.points = np.linspace(-10, 10, nt)
+exp.s1.points = exp.s2.points = dt  # fs
+
+exp.d1.active = exp.d2.active = True
+
+exp.timestep = 1
+exp.early_buffer = 100.
+exp.late_buffer = 300.
+
+
+def check_phase():
+    # TODO: use assertions to check phase
+    scan = exp.run(ham, mp=False, windowed=True)
+
+    efields = scan.efields()
+    zi0=scan.sig.channels[0][:]
+    zi1=scan.sig.channels[1][:]
+    sig=zi0+zi1
+
+    driven_sig = 1j * efields.prod(axis=-2)
+
+    diff = []
+    driven_diff = []
+
+    for i in range(scan.npulses):
+        lo = efields[..., i, :]
+        if scan.pm[i] == 1:
+            lo = lo.conjugate()
+        diff.append((lo * sig).imag.sum(axis=-1))
+        driven_diff.append((lo * driven_sig).imag.sum(axis=-1))
+
+    return diff, driven_diff
+
+
+if __name__ == "__main__":
+    diff, driven_diff = check_phase()
+
+    # plot amplitude    
+    import matplotlib.pyplot as plt
+    plt.close('all')
+    fig, gs = wt.artists.create_figure(width='single', nrows=2, cols=[1, 1, 1])
+    for i, (di, ddi) in enumerate(zip(diff, driven_diff)):
+
+        axi = plt.subplot(gs[i])
+        axi.pcolormesh(exp.d2.points, exp.d1.points, -di, 
+                    vmin=-np.abs(di).max(),
+                    vmax=np.abs(di).max(),
+                    cmap='signed')
+        axi2 = plt.subplot(gs[i+3])
+        axi2.pcolormesh(exp.d2.points, exp.d1.points, ddi,
+                        vmin=-np.abs(ddi).max(),
+                        vmax=np.abs(ddi).max(),
+                        cmap='signed')
+        [ax.grid(True) for ax in [axi, axi2]]
+
+    plt.show()