yeastmine.properties.dev

# This file specifies the how to access local postgres databases used for
# building and running and InterMine.bio warehouse.  Also some configuration
# of InterMine behaviour.

#######################
# database properties #
db.sgd.datasource.class=org.postgresql.ds.PGPoolingDataSource
db.sgd.datasource.dataSourceName=db.sgd
db.sgd.datasource.serverName=SGD_PGHOST
db.sgd.datasource.databaseName=sgd
db.sgd.datasource.user=SGD_PSQL_USER
db.sgd.datasource.password=SGD_PSQL_PWD
db.sgd.datasource.maxConnections=10
db.sgd.driver=org.postgresql.Driver
db.sgd.datasource.portNumber=5432
db.sgd.platform=PostgreSQL
os.production.verboseQueryLog=true

#mysql database for reading spell data
db.yeast.datasource.dataSourceName=db.yeast
db.yeast.datasource.maxConnections=10
db.yeast.datasource.serverName=SPELL_HOST
db.yeast.datasource.databaseName=yeast
db.yeast.datasource.user=SPELL_USER
db.yeast.datasource.password=SPELL_PWD
db.yeast.datasource.class=com.mysql.jdbc.jdbc2.optional.MysqlConnectionPoolDataSource
db.yeast.driver=com.mysql.jdbc.Driver
db.yeast.platform=MySQL


# Access to the postgres database to build into and access from the webapp
db.production.datasource.serverName=INTERMINE_PGHOST
db.production.datasource.databaseName=yeastmine-dev
db.production.datasource.user=INTERMINE_PSQL_USER
db.production.datasource.password=INTERMINE_PSQL_PWD

# Temporary database used during the build process, this is re-built
# as sources are loaded and can be discarded once the warehouse build is complete
# It uses the InterMine 'items' metadata format to describe objects.

# common target items database
db.common-tgt-items.datasource.serverName=INTERMINE_PGHOST
db.common-tgt-items.datasource.databaseName=items-yeastmine-dev
db.common-tgt-items.datasource.user=INTERMINE_PSQL_USER
db.common-tgt-items.datasource.password=INTERMINE_PSQL_PWD


# userprofile database - used by the webapp to store logins, query history,
# saved bags, templates and tags.
db.userprofile-production.datasource.serverName=INTERMINE_PGHOST
db.userprofile-production.datasource.databaseName=userprofile-yeastmine
db.userprofile-production.datasource.user=INTERMINE_PSQL_USER
db.userprofile-production.datasource.password=INTERMINE_PSQL_PWD


#####################
# webapp properties #
#####################
build.compiler=modern

# Web application deployment properties
webapp.tomcat.version=8

# location of tomcat server and path of webapp - e.g. access http://localhost:8080/yeastmine
webapp.deploy.url=http://localhost:8080
webapp.path=yeastmine-dev

# tomcat username and password needed to deploy webapp
webapp.manager=TOMCAT_USER
webapp.password=TOMCAT_PWD

# 'Home' link
webapp.baseurl=http://localhost:8080

# account name for superuser (who can edit appearance and publish templates)
superuser.account=superuser@mail_account
superuser.initialPassword=xxxx

# run with no associated web site
project.standalone=true

# details for sending login e-mails
mail.host=localhost
mail.smtp.starttls.enable=true
mail.from=kkarra@stanford.edu
mail.subject=Password for the YeastMine system
mail.text=Your password for the YeastMine system is: {0}

# text that appears in the header and elsewhere
project.title=YeastMine
project.subTitle=Search and retrieve <i>S. cerevisiae</i> data with YeastMine, populated by SGD and powered by InterMine.
project.releaseVersion=2012-04-15

# various URLs use this as the prefix
project.sitePrefix=http://localhost:8080/yeastmine-dev
project.modSitePrefix=http://www.yeastgenome.org
project.helpLocation=http://www.flymine.org/help

# recipient of feedback form located on bottom of every page
feedback.destination = kkarra@stanford.edu

# ObjectStores to use - this should not need to change
webapp.os.alias=os.production
webapp.userprofile.os.alias=osw.userprofile-production

#blog news update section
project.rss=https://intermineorg.wordpress.com/feed
links.blog=https://intermineorg.wordpress.com
#google.analytics.id=UA-xxx
#searchengines.google=UA-xxx

resolver.file.rootpath=/data/intermine/idresolver/