Package to extract, visualize, convert and study interactions from database into executable activity flow based model. Omniflow (temporary name), is based on Omnipath (https://github.com/saezlab/omnipath), pypath (https://github.com/saezlab/pypath) and Atopo (https://github.com/druglogics/atopo).
This is a work-in-progress package made in collaboration with Dénes Turei and Asmund Flobak.
ROADMAP:
version 0.1.0
- Network core object to store nodes and edges
- Inputs methods: list of nodes, sif file
- Enrichment methods: Shortest path (pypath)
- Resources: Omnipath (All interactions)
- Output formats: bnet file