ENH: Testing. #11
Workflow file for this run
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| name: R-CMD-check ANTsRNet | |
| on: | |
| push: | |
| branches: [ main, master ] | |
| pull_request: | |
| branches: [ main, master ] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-22.04 | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libcurl4-openssl-dev libssl-dev libxml2-dev | |
| # 🧠 Cache R packages | |
| - name: Cache R packages | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/R | |
| key: ${{ runner.os }}-r-pkgs-${{ hashFiles('DESCRIPTION') }} | |
| restore-keys: | | |
| ${{ runner.os }}-r-pkgs- | |
| # ✅ Install key R packages (pin reticulate version!) | |
| - name: Install R dependencies | |
| run: | | |
| Rscript -e 'install.packages(c("remotes", "testthat", "tensorflow", "reticulate"), repos = "https://cloud.r-project.org")' | |
| Rscript -e 'remotes::install_version("reticulate", version = "1.34.0", repos = "https://cloud.r-project.org")' | |
| # ✅ Install and configure Miniconda (clean Python) | |
| - name: Install and configure Miniconda | |
| run: | | |
| Rscript -e 'reticulate::install_miniconda(force = TRUE)' | |
| Rscript -e 'reticulate::use_miniconda("r-reticulate", required = TRUE)' | |
| Rscript -e 'reticulate::py_config()' | |
| # ✅ Install TensorFlow into that Python environment | |
| - name: Install TensorFlow | |
| run: | | |
| Rscript -e 'tensorflow::install_tensorflow(version = "default")' | |
| # ✅ Configure GitHub PAT (ensure this secret exists!) | |
| - name: Configure GitHub PAT | |
| run: | | |
| echo "GITHUB_PAT=${{ secrets.GH_PAT }}" >> $GITHUB_ENV | |
| echo "GITHUB_PAT=${{ secrets.GH_PAT }}" >> ~/.Renviron | |
| # ✅ Install ANTsR from GitHub | |
| - name: Install ANTsR | |
| run: | | |
| Rscript -e 'remotes::install_github("ANTsX/ANTsR", dependencies = TRUE)' | |
| # ✅ Install ANTsRNet (current repo) | |
| - name: Install ANTsRNet | |
| run: | | |
| Rscript -e 'remotes::install_local(".", dependencies = TRUE)' | |
| # ✅ Run tests | |
| - name: Run tests | |
| run: | | |
| Rscript -e 'testthat::test_dir("tests/testthat", reporter = testthat::SummaryReporter$new())' |