ENH: Testing. #33
Workflow file for this run
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| name: R-CMD-check ANTsRNet | |
| on: | |
| push: | |
| branches: [ main, master ] | |
| pull_request: | |
| branches: [ main, master ] | |
| jobs: | |
| test: | |
| runs-on: ubuntu-22.04 | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RETICULATE_PYTHON: /usr/bin/python3 | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| - name: Setup R | |
| uses: r-lib/actions/setup-r@v2 | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libcurl4-openssl-dev libssl-dev libxml2-dev python3 python3-pip | |
| - name: Cache R packages | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/R | |
| key: ${{ runner.os }}-r-pkgs-${{ hashFiles('DESCRIPTION') }} | |
| restore-keys: | | |
| ${{ runner.os }}-r-pkgs- | |
| - name: Install Python deps | |
| run: | | |
| python3 -m pip install --upgrade pip | |
| python3 -m pip install tensorflow==2.12 numpy==1.23 h5py | |
| - name: Install R dependencies with pinned reticulate | |
| run: | | |
| Rscript -e ' | |
| cat("✅ Installing R packages...\n"); | |
| install.packages(c("remotes", "testthat", "tensorflow", "reticulate"), repos = "https://cloud.r-project.org"); | |
| cat("✅ Pointing reticulate to system Python...\n"); | |
| reticulate::use_python(Sys.getenv("RETICULATE_PYTHON"), required = TRUE); | |
| cat("✅ Installing TensorFlow via R package...\n"); | |
| tensorflow::install_tensorflow(version = "2.12"); | |
| ' | |
| - name: Configure GitHub PAT | |
| run: | | |
| echo "GITHUB_PAT=${{ secrets.GH_PAT }}" >> $GITHUB_ENV | |
| echo "GITHUB_PAT=${{ secrets.GH_PAT }}" >> ~/.Renviron | |
| - name: Install ANTsR | |
| run: | | |
| Rscript -e 'remotes::install_github("ANTsX/ANTsR", dependencies = TRUE)' | |
| - name: Install ANTsRNet | |
| run: | | |
| Rscript -e 'remotes::install_local(".", dependencies = TRUE)' | |
| - name: Run tests individually (non-fatal) | |
| continue-on-error: true | |
| run: | | |
| for f in tests/testthat/test_*.R; do | |
| echo "===== Running $f =====" | |
| Rscript -e "testthat::test_file('$f', reporter = 'summary')" || echo "Test $f failed" | |
| done |