- Use the Jupyter notebook to generate matrix for E10.5 and E11.5 for the h5ad files.
- Use the shf_oft_trajectory.R script to generate the trajectory.
- Use the marker_expression_CI.R to generate CI plots for a particular biomarker.
- Use the fit_Lorentzian.R script to fit Lorentizian to data.
-
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Scripts for extracting the SHF-OFT trajectory from spatial sequencing data and predicting cell migration
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AnniceNajafi/mice_cardiogenesis_hedgehog
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Scripts for extracting the SHF-OFT trajectory from spatial sequencing data and predicting cell migration
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