Update to python 3.13

Signed-off-by: Prabhu Subramanian <[email protected]>

meta.yaml

@@ -28,7 +28,7 @@ requirements:
     - conda-forge::psutil>=6.1.0,<7.0.0
     - conda-forge::packageurl-python>=0.11.2,<0.12.0
     - conda-forge::gitpython>=3.1.43,<4.0.0
-    - conda-forge::networkx>=3.3
+    - conda-forge::networkx>=3.4.2
 build:
   include_recipe: False
   pin_depends: record

pyproject.toml

@@ -62,21 +62,21 @@ optional = true
 optional = true
 
 [tool.poetry.group.science.dependencies]
-networkx = {extras = ["default", "extra"], version = "^3.3"}
-torch-geometric = "^2.5.3"
-torch = {version = "^2.3.0+cpu", source = "torch"}
+networkx = {extras = ["default", "extra"], version = "^3.4.2"}
+torch-geometric = "^2.6.1"
+torch = {version = "^2.5.1+cpu", source = "torch"}
 torchtext = {version = "^0.18.0+cpu", markers = "sys_platform == 'linux' or sys_platform == 'darwin'", source = "torch"}
-nbconvert = "^7.16.3"
+nbconvert = "^7.16.4"
 jupyter-core = "^5.7.2"
-jupyter-client = "^8.6.1"
-notebook = "^7.1.3"
+jupyter-client = "^8.6.3"
+notebook = "^7.2.2"
 
 [tool.poetry.group.database.dependencies]
-networkx = {extras = ["default", "extra"], version = "^3.1"}
+networkx = {extras = ["default", "extra"], version = "^3.4.2"}
 
 [[tool.poetry.source]]
 name = "pyg"
-url = "https://data.pyg.org/whl/torch-2.3.0+cpu.html"
+url = "https://data.pyg.org/whl/torch-2.5.1+cpu.html"
 priority = "explicit"