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Support compressed (e.g. gzipped) fasta files for cgMLST alleles

Status: Open.

#227 In B-UMMI/chewBBACA;

· samuell opened on Oct 1, 2025

cgMLST for diverse genus

Status: In ProgressHas been assigned and is being worked on.Has been assigned and is being worked on.

Status: Open.

#226 In B-UMMI/chewBBACA;

· frschwa opened on Sep 4, 2025

Limit of 30 characters in filename prefix

Status: In ProgressHas been assigned and is being worked on.Has been assigned and is being worked on.

Status: Open.

#225 In B-UMMI/chewBBACA;

· ryanjameskennedy opened on Aug 13, 2025

Unable to connect to chewbbaca.online to retrieve species list (DownloadSchema)

Status: In ProgressHas been assigned and is being worked on.Has been assigned and is being worked on.

Status: Open.

#223 In B-UMMI/chewBBACA;

· jimmlucas opened on Jul 8, 2025

Addition of alleles to schema

Status: In ProgressHas been assigned and is being worked on.Has been assigned and is being worked on.

Status: Open.

#222 In B-UMMI/chewBBACA;

· arshdeep1k opened on Jun 24, 2025

Why does CreateSchema not generate the necessary schema files (.json, .gbk, schema_alleles) for running AlleleCall?

Status: In ProgressHas been assigned and is being worked on.Has been assigned and is being worked on.

Status: Open.

#220 In B-UMMI/chewBBACA;

· MayMoraxella opened on May 24, 2025

AlleleCall not detecting valid .fna input files (v2.8.5)

Status: In ProgressHas been assigned and is being worked on.Has been assigned and is being worked on.

Status: Open.

#218 In B-UMMI/chewBBACA;

· EdDjonlagic2 opened on May 13, 2025

Error on assign_allele_ids in AlleleCall module

Status: In ProgressHas been assigned and is being worked on.Has been assigned and is being worked on.

Status: Open.

#215 In B-UMMI/chewBBACA;

· artmisk13 opened on Mar 19, 2025

Mamba installation of chewBBACA v3.3.10 requires plotly v5

Status: In ProgressHas been assigned and is being worked on.Has been assigned and is being worked on.

Type: Bug

Status: Open.

#214 In B-UMMI/chewBBACA;

· valzip opened on Mar 8, 2025

Application of chewBBACA onto Fungal Genomes

Status: In ProgressHas been assigned and is being worked on.Has been assigned and is being worked on.

Status: Open.

#213 In B-UMMI/chewBBACA;

· maurkarr opened on Feb 4, 2025

PrepExternalSchema command stuck at 98% completeness

Status: In ProgressHas been assigned and is being worked on.Has been assigned and is being worked on.

Status: Open.

#212 In B-UMMI/chewBBACA;

· AnyaKovalenko opened on Jan 23, 2025

What will happen when using chewBBACA with a diploid genome?

Status: Open.

#211 In B-UMMI/chewBBACA;

· dutchscientist opened on Jan 13, 2025