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  1. centreseq centreseq Public

    Easily establish a core genome among bacterial strains

    Python 2

  2. BaseMountRetrieve BaseMountRetrieve Public

    Package for retrieving files from BaseMount in the output style of a local MiSeq run

    Python 1

  3. ProkaryoteAssembly ProkaryoteAssembly Public

    Simple CLI assembly pipeline tuned for prokaryotes

    Python 1

  4. EnteroTyper EnteroTyper Public

    Scripts to type and compare assemblies based off of Enterobase schemes

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  5. vfdbQuery vfdbQuery Public

    vfdbQuery is a simple script for querying an input genome assembly against the Virulence Factor Database (VFDB)

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