Skip to content

Commit

Permalink
TST Set minimal samtools version
Browse files Browse the repository at this point in the history
Otherwise, conda will default to a very old version, which causes
issues.
  • Loading branch information
luispedro committed Feb 13, 2025
1 parent edb940b commit 85d74c8
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion .github/workflows/semibin_test.yml
Original file line number Diff line number Diff line change
Expand Up @@ -29,7 +29,7 @@ jobs:
- name: Install dependencies
shell: bash -l {0}
run : |
conda install -c conda-forge -c bioconda numpy pandas pytest hypothesis"<=6.112.1" python-igraph scikit-learn requests numexpr tqdm pytorch bedtools hmmer fraggenescan prodigal samtools mmseqs2
conda install -c conda-forge -c bioconda numpy pandas pytest hypothesis"<=6.112.1" python-igraph scikit-learn requests numexpr tqdm pytorch bedtools hmmer fraggenescan prodigal "samtools>=1.21" mmseqs2
pip install .
- name: Test with pytest
shell: bash -l {0}
Expand Down

0 comments on commit 85d74c8

Please sign in to comment.