ENH: check RGI mapping accuracy and manually curate incorrect hits #490

	name: Test argNorm

	on:
	- push
	- pull_request

	jobs:
	build:
	runs-on: ubuntu-22.04
	strategy:
	fail-fast: false
	matrix:
	python-version:
	- "3.7"
	- "3.8"
	- "3.9"
	- "3.10"
	- "3.11"
	- "3.12"

	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v3
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install uv
	uses: astral-sh/setup-uv@v5
	with:
	python-version: ${{ matrix.python-version }}
	version: "0.5.29"
	enable-cache: true
	cache-dependency-glob: "uv.lock"
	- name: Install dependencies
	run: \|
	uv sync --all-extras --dev
	uv pip install flake8 pytest
	- name: Lint with flake8
	run: \|
	# stop the build if there are Python syntax errors or undefined names
	flake8 argnorm --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 argnorm --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
	- name: Test with pytest
	run: \|
	uv run pytest tests/
	- name: Test with argNorm command
	run: \|
	for t in integration_tests/*.py; do
	echo "Running $t ..."
	python $t
	done

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