MIN Add docs on --keep-negatives

BigDataBiology · Mar 16, 2020 · 3ea035a · 3ea035a
1 parent d2fbbc4
commit 3ea035a
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/docs/usage.md b/docs/usage.md
@@ -34,6 +34,7 @@ If you have not yet installed macrel, see [install](install).
 - `--tmpdir`: Temporary directory to use (default: `$TMPDIR` in the environment or /tmp)
 - `--force`: Potentially over-write existing output files
 - `--keep-fasta-headers`: Keep complete FASTA headers [get-smorfs command]
+- `--keep-negatives`: Output a table with **all** sequences (default is to only output putative AMPs)
 
 Also, `macrel --version` will show the version of macrel installed.