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BiSBi @ Centre of Biological Engineering

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  1. DeepMol DeepMol Public

    DeepMol: A Machine and Deep Learning Framework for Computational Chemistry

    Python 153 13

  2. MEWpy MEWpy Public

    Metabolic Engineering Workbench

    Python 40 12

  3. propythia propythia Public

    Python generic modular semi-automated platform containing functions for the classification of proteins based on their physicochemical properties using ML.

    Jupyter Notebook 32 10

  4. troppo troppo Public

    Reconstruction algorithms for Python

    Jupyter Notebook 25 7

  5. cobamp cobamp Public

    Constraint-based modeling framework for the enumeration of pathway analysis concepts

    Jupyter Notebook 14 2

  6. ReactEA ReactEA Public

    ReactEA: Combining Evolutionary Algorithms With Reaction Rules Towards Focused Molecular Design

    Python 8 2

Repositories

Showing 10 of 29 repositories
  • DeepMol Public

    DeepMol: A Machine and Deep Learning Framework for Computational Chemistry

    BioSystemsUM/DeepMol’s past year of commit activity
    Python 153 BSD-2-Clause 13 15 1 Updated Jun 25, 2025
  • BioSystemsUM/drug_response_pipeline’s past year of commit activity
    Python 7 MIT 1 1 0 Updated Jun 9, 2025
  • BioCatalyzer Public

    BioCatalyzer: a rule-based tool to predict compound metabolism

    BioSystemsUM/BioCatalyzer’s past year of commit activity
    Python 6 MIT 0 1 0 Updated May 28, 2025
  • PredInhib-MTB Public
    BioSystemsUM/PredInhib-MTB’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 0 Updated May 7, 2025
  • diel_models Public

    Tool to convert generic plant GEMs to diel plant GEMs

    BioSystemsUM/diel_models’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Mar 6, 2025
  • ReactEA Public

    ReactEA: Combining Evolutionary Algorithms With Reaction Rules Towards Focused Molecular Design

    BioSystemsUM/ReactEA’s past year of commit activity
    Python 8 GPL-3.0 2 2 0 Updated Feb 12, 2025
  • deepmol_case_studies Public

    Case Studies from the DeepMol Publication

    BioSystemsUM/deepmol_case_studies’s past year of commit activity
    Jupyter Notebook 7 BSD-2-Clause 1 0 0 Updated Jan 23, 2025
  • troppo Public

    Reconstruction algorithms for Python

    BioSystemsUM/troppo’s past year of commit activity
    Jupyter Notebook 25 GPL-3.0 7 7 (1 issue needs help) 1 Updated Oct 23, 2024
  • BioSystemsUM/BioCatalyzer-CaseStudy’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Aug 16, 2024
  • MEWpy Public

    Metabolic Engineering Workbench

    BioSystemsUM/MEWpy’s past year of commit activity
    Python 40 GPL-3.0 12 7 0 Updated Jun 9, 2024