Initial script for shuffle DO NOT MERGE

shuffle.sh

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+#!/bin/bash
+
+set -e
+
+# Set configuration
+WORK_DIR="${HOME}/work/library_shuffle"
+
+CABLE_REPO="[email protected]:CABLE-LSM/CABLE.git"
+CABLE_BRANCH="538-the-great-library-shuffle"
+CABLE_DIR="${WORK_DIR}/cable"
+CABLE_SHARED_DIR=$CABLE_DIR/src/shared
+CABLE_ESM15_DIR=$CABLE_DIR/src/coupled/ESM1.5
+CABLE_ESM16_DIR=$CABLE_DIR/src/coupled/esm16
+CABLE_ESM_DIR=$CABLE_DIR/src/coupled/esm
+CABLE_COUPLED_SHARED_DIR=$CABLE_DIR/src/coupled/shared
+
+UM7_REPO="[email protected]:ACCESS-NRI/UM7.git"
+UM7_BRANCH="64-the-great-library-shuffle"
+UM7_DIR="${WORK_DIR}/um7"
+UM7_ESM15_DIR=$UM7_DIR/umbase_hg3/src/atmosphere/CABLE/src/coupled/ESM1.5
+UM7_COUPLED_SHARED_DIR=$UM7_DIR/umbase_hg3/src/atmosphere/CABLE/src/coupled/shared
+UM7_ESM15_SUBDIR=$UM7_ESM15_DIR/CABLEfilesFromESM1.5
+UM7_CABLE_DIR=$UM7_DIR/umbase_hg3/src/atmosphere/land_surface/cable
+
+# Delete and remake work dir
+rm -rf $WORK_DIR
+mkdir -p $WORK_DIR
+
+# Clone everything
+cd $WORK_DIR
+git clone $CABLE_REPO $CABLE_DIR
+git clone $UM7_REPO $UM7_DIR
+
+# Check out the CABLE branch for the shuffle
+cd $CABLE_DIR
+git fetch origin
+git checkout $CABLE_BRANCH
+
+# Check out specific branches
+cd $UM7_DIR
+git fetch origin
+git checkout $UM7_BRANCH
+
+echo "check content of UM7_ESM15_DIR"
+ls $UM7_ESM15_DIR/
+
+# Create a src/shared dir in CABLE
+mkdir -p $CABLE_SHARED_DIR
+
+# Move from offline to shared
+mv -v $CABLE_DIR/src/offline/cable_LUC_EXPT.F90 $CABLE_SHARED_DIR/
+mv -v $CABLE_DIR/src/offline/cable_phenology.F90 $CABLE_SHARED_DIR/
+mv -v $CABLE_DIR/src/offline/casa_ncdf.F90 $CABLE_SHARED_DIR/
+mv -v $CABLE_DIR/src/offline/casa_offline_inout.F90 $CABLE_SHARED_DIR/
+
+# Remove them from offline (done in move above)
+
+# Remove from ESM1.5 (none)
+
+# Remove from esm16
+rm -rf $CABLE_ESM16_DIR/cable_LUC_EXPT.F90
+rm -rf $CABLE_ESM16_DIR/cable_phenology.F90
+rm -rf $CABLE_ESM16_DIR/casa_ncdf.F90
+rm -rf $CABLE_ESM16_DIR/casa_offline_inout.F90
+
+# Add shared to CMakeLists.txt (manual)
+
+# Create the land_surface/cable dir
+mkdir -p $UM7_CABLE_DIR
+
+# Move source into it (not sure if we need to delete the src location?)
+cp $UM7_ESM15_DIR/casa_types.F90 $UM7_CABLE_DIR/
+cp $UM7_ESM15_DIR/pack_mod_cbl.F90 $UM7_CABLE_DIR/
+cp $UM7_ESM15_DIR/casa_um_inout.F90 $UM7_CABLE_DIR/
+cp $UM7_ESM15_SUBDIR/cable_rad_driver.F90 $UM7_CABLE_DIR/
+cp $UM7_ESM15_SUBDIR/cable_um_init.F90 $UM7_CABLE_DIR/
+cp $UM7_ESM15_SUBDIR/cable_um_init_subrs.F90 $UM7_CABLE_DIR/
+cp $UM7_ESM15_SUBDIR/cable_um_tech.F90 $UM7_CABLE_DIR/
+cp $UM7_ESM15_SUBDIR/allocate_soil_params_cbl.F90 $UM7_CABLE_DIR/
+cp $UM7_ESM15_SUBDIR/allocate_veg_params_cbl.F90 $UM7_CABLE_DIR/
+cp $UM7_ESM15_SUBDIR/cable_cbm.F90 $UM7_CABLE_DIR/
+cp $UM7_ESM15_SUBDIR/cable_explicit_driver.F90 $UM7_CABLE_DIR/
+cp $UM7_ESM15_SUBDIR/cable_hyd_driver.F90 $UM7_CABLE_DIR/
+cp $UM7_ESM15_SUBDIR/cable_implicit_driver.F90 $UM7_CABLE_DIR/
+cp $UM7_ESM15_SUBDIR/cbl_um_init_soil.F90 $UM7_CABLE_DIR/
+cp $UM7_ESM15_SUBDIR/cbl_um_init_soilsnow.F90 $UM7_CABLE_DIR/
+cp $UM7_ESM15_SUBDIR/cbl_um_update_soilsnow.F90 $UM7_CABLE_DIR/
+cp $UM7_ESM15_SUBDIR/cable_read_nml.F90 $UM7_CABLE_DIR/
+
+# casa_um_inout.F90 (currently in esm16/ but it needs to be deleted from there)
+# it is not there?
+
+# Put in $CABLE_DIR/src/coupled/esm/, copied from $UM7_DIR/src/atmosphere/CABLE/src/coupled/ESM1.5/
+mkdir -p $CABLE_ESM_DIR
+cp $UM7_ESM15_DIR/cable_surface_types.F90 $CABLE_ESM_DIR/
+cp $UM7_ESM15_DIR/casa_landuse.F90 $CABLE_ESM_DIR/
+cp $UM7_ESM15_SUBDIR/cable_define_types.F90 $CABLE_ESM_DIR/
+cp $UM7_ESM15_SUBDIR/cable_iovars.F90 $CABLE_ESM_DIR/
+cp $UM7_ESM15_DIR/cable_pft_params_mod.F90 $CABLE_ESM_DIR/
+cp $UM7_ESM15_DIR/cable_soil_params_mod.F90 $CABLE_ESM_DIR/
+
+# Remove unnecessary directories
+rm -r $CABLE_ESM16_DIR
+rm -r $CABLE_ESM15_DIR
+rm -r $CABLE_DIR/src/coupled/ACCESS-CM2
+
+# Replace CABLE directory in UM7 with the one with the reorganised files. We can't do a clean sweep as the sync between the repos isn't complete.
+mv -v $UM7_DIR/umbase_hg3/src/atmosphere/CABLE/src/science $UM7_DIR/umbase_hg3/src/atmosphere/CABLE/
+mv -v $UM7_DIR/umbase_hg3/src/atmosphere/CABLE/src/util $UM7_DIR/umbase_hg3/src/atmosphere/CABLE/
+mv -v $UM7_DIR/umbase_hg3/src/atmosphere/CABLE/src/params $UM7_DIR/umbase_hg3/src/atmosphere/CABLE/
+mv -v $UM7_COUPLED_SHARED_DIR $UM7_DIR/umbase_hg3/src/atmosphere/CABLE/
+rm -r $UM7_DIR/umbase_hg3/src/atmosphere/CABLE/src/
+cp -r $CABLE_DIR/src $UM7_DIR/umbase_hg3/src/atmosphere/CABLE/
+rm -r $UM7_DIR/umbase_hg3/src/atmosphere/CABLE/src/offline
+rm -r $UM7_DIR/umbase_hg3/src/atmosphere/CABLE/src/coupled/AM3
+rm -r $UM7_DIR/umbase_hg3/src/atmosphere/CABLE/src/coupled/JAC
+rm -r $UM7_DIR/umbase_hg3/src/atmosphere/CABLE/src/coupled/shared
+rm -r $UM7_DIR/umbase_hg3/src/atmosphere/CABLE/src/params
+rm -r $UM7_DIR/umbase_hg3/src/atmosphere/CABLE/src/science
+rm -r $UM7_DIR/umbase_hg3/src/atmosphere/CABLE/src/util
+mv -v $UM7_DIR/umbase_hg3/src/atmosphere/CABLE/params $UM7_DIR/umbase_hg3/src/atmosphere/CABLE/src/
+mv -v $UM7_DIR/umbase_hg3/src/atmosphere/CABLE/science $UM7_DIR/umbase_hg3/src/atmosphere/CABLE/src/
+mv -v $UM7_DIR/umbase_hg3/src/atmosphere/CABLE/util $UM7_DIR/umbase_hg3/src/atmosphere/CABLE/src/ 
+mv -v $UM7_DIR/umbase_hg3/src/atmosphere/CABLE/shared $UM7_DIR/umbase_hg3/src/atmosphere/CABLE/src/coupled/
+# Uncomment the #define lines for the pre-processor flags in the science code manually.
+
+# Perform the git commit/push manually once we verify this is all moved correctly.