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This repository has been archived by the owner on Feb 6, 2024. It is now read-only.

Beta version 1.7-beta7

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@bqminh bqminh released this 18 Dec 03:43
· 44 commits to master since this release
v1.7-beta7
0cfee46
  • Fix crash with --scf for rooted tree (reported by Aaron Liston).
  • --cf-verbose to print details about gCF for each gene tree (.cf.stat_tree file) and sCF for each locus (.cf.stat_loci file).
  • Parallelised sCF computation.
  • --bisymtest-remove-bad[-good] will write .good.nex or .bad.nex partition file (requested by Renee Catullo).
  • Ancestral sequence reconstruction (-asr) now works when there are absent state(s).
  • Bug in eigen decomposition and matrix exponentiation for Lie Markov models.
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