Generate available variant calls for C57BL/6J and DBA/2J heterozygosis (GRCm38) from MGP variant calls.
The Mouse Genomes Project (MGP, https://www.sanger.ac.uk/data/mouse-genomes-project/) uses next generation sequencing technologies to sequence the genomes of key laboratory mouse strains. Here, we integrated the variant calls (SNPs) from C57BL/6NJ and DBA/2J for the analysis of filial generation.
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Download the datasets from MGP (see
data/00_download.sh). -
Next, perform the integration at the
jupyter.ipynb.