Fix missing env

[yeelauren]

Hey friends!
While testing locally, I noticed that the environment.yml file seems to be missing some packages for the notebooks in /docs.
I've made my attempt at fixing the version numbers.

I also noticed that this repo is missing a reference to the submodule stacchip

model/docs/clay-v1-wall-to-wall.ipynb

Line 56 in a61f9fa

"from stacchip.processors.prechip import normalize_timestamp\n",

To get this to run locally, I had to copy and move the directory around for stacchip.

[yellowcap]

Not sure if we should also update the conda-lock.yml file with this?

[weiji14]

Hi @yeelauren! Thanks for opening this, the conda environment definitely needs an update with all the recent changes. Could you refresh the conda-lock.yml file as @yellowcap mentioned after adding stacchip (see suggestion below)? You can do this by following the instructions at https://clay-foundation.github.io/model/installation.html#advanced, i.e. run:

conda-lock lock --mamba --file environment.yml --with-cuda=12.0

[weiji14]

I also noticed that this repo is missing a reference to the submodule stacchip

Yes, could you add the following lines (copied from #211) to the environment.yml file:

  - pip
  - pip:
     - https://github.com/Clay-foundation/stacchip/archive/refs/tags/0.1.30.zip

@yellowcap, just confirming that it's v0.1.30 that we want here?

[yellowcap]

stacchip is pip installable now 😄 https://pypi.org/project/stacchip/ So the addition should read

  - pip
  - pip:
     - stacchip==0.1.30

[yellowcap]

We removed the stacchip library from the dependencies, as it was only used in one notebook for one tiny function. The updated wall-to-wall notebook is now independent of stacchip.

I think with this also the geoarrow and boto3 dependencues are no longer necessary. @yeelauren when you have time, please test your workflow again using main or the branch and let us know if the dependency issues were resolved.

Btw, we are also updating other libraries on the env file in #264

[yellowcap]

I think this has been fixed in updating the env here #264 and removing stacchip from the wall-to-wall example here #263.

@yeelauren feel free to reopen if you still encounter these problems.